A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6KQF  PDB ID: 6KQF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
111GG_DA18DG19:C1U2_II-0.35-0.6613.4285.6789.26938.199-2.0781.1923.10913.825-8.46939.659
12GG_DC5DT7:DA21DG23_HH-1.774-0.4376.58-1.7660.23572.038-0.3881.3896.6150.21.50172.057
14GG_DC8DC9:DG19DG20_HH-0.3860.4083.142-3.60213.59139.542-0.8340.1673.13319.3615.13141.873
15GG_DC9DT11:DA17DG19_HH0.9311.2716.00.63216.53965.235-0.07-0.7966.14115.09-0.57767.077
19GG_DC16DG17:C3G4_II0.079-1.7153.562-5.0719.66128.802-5.136-1.1472.818.6019.76430.758
11GG_DG4DC5:DG23DC24_HH-0.494-0.4124.2410.835-19.11938.3092.0010.7913.994-27.167-1.18742.662
17GG_DG12DA13:DT15DC16_HH-0.2420.0163.176-0.09916.22335.621-1.890.352.91524.9840.15239.032
110GG_DG17DA18:U2C3_II-0.29-1.6683.198-2.3845.38837.411-3.2250.1582.958.3363.68937.856
13GG_DT7DC8:DG20DA21_HH0.9840.9683.362-1.005-0.99824.8722.547-2.5863.28-2.3142.33224.912
16GG_DT11DG12:DC16DA17_HH-0.021.023.0172.25-0.72924.822.5640.6632.973-1.691-5.2224.931
18GG_DT15DC16:G4A5_II-0.363-0.8192.8790.98911.84326.295-3.8360.9122.28924.503-2.04528.813

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.