A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6KQG  PDB ID: 6KQG 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13GG_DA6DT7:DA21DT22_HH0.214-0.7433.701-7.0752.22237.441-1.451-1.333.5563.4210.8938.143
113GG_DA18DG19:C3U4_II-0.186-1.0223.202-0.0164.90526.038-3.4660.4012.96310.7650.03426.488
12GG_DC5DA6:DT22DG23_HH-1.1450.2384.008-7.14.6632.732-0.5470.5124.1528.112.34133.786
15GG_DC8DC9:DG19DG20_HH0.0160.242.873-0.4358.18736.791-0.57-0.0752.85912.7770.67937.663
16GG_DC9DG10:DC18DG19_HH0.340.4042.9593.07323.37922.988-3.196-0.0872.40245.934-6.03732.817
111GG_DC16DG17:C5G6_II0.264-1.7533.638-7.15316.6627.196-5.919-1.6712.11331.39213.47832.591
11GG_DG4DC5:DG23DC24_HH-0.7180.5493.584-5.308-12.87336.832.4830.3813.287-19.5388.05739.289
17GG_DG10DT11:DA17DC18_HH-0.0630.763.28-3.1193.93136.8540.661-0.3243.3356.1834.90537.183
19GG_DG12DA13:DT15DC16_HH-0.715-0.0723.259-1.02113.67530.702-2.3671.0712.98124.361.81933.558
112GG_DG17DA18:U4C5_II-0.698-1.5083.104-3.1255.85235.284-3.2190.722.8759.555.09935.883
114GG_DG19DG20:C2C3_II-0.018-0.2143.3692.6292.34542.501-0.5360.2973.3463.229-3.61942.64
14GG_DT7DC8:DG20DA21_HH0.1260.1632.68711.238-2.04131.7560.5561.2972.568-3.589-19.75533.698
18GG_DT11DG12:DC16DA17_HH0.9141.0042.951-2.8266.35235.1710.794-1.8583.00110.3864.62235.83
110GG_DT15DC16:G6A7_II-0.154-0.8443.0990.8388.130.458-2.9360.4262.78315.081-1.5631.503

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.