A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
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NDB ID: 6KQL  PDB ID: 6KQL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13G_DA6:DT22_H-0.455-0.246-0.208-14.003-12.644-13.513
110G_DA13:DT15_H-0.2720.1350.56711.0481.83317.935
12G_DC5:DG23_H1.327-0.5781.105-6.562-3.713-8.44
15G_DC8:DG20_H0.155-0.206-0.066-3.569-11.982-3.078
16G_DC9:DG19_H0.7650.0440.387-7.328-6.1732.409
112G_DC16:G6_I0.482-0.17-0.57220.082-4.537.764
11G_DG4:DC24_H0.591-0.4541.55138.455-4.799-11.071
17G_DG10:DC18_H0.159-0.157-0.693-9.743-13.067-3.394
19G_DG12:DC16_H-0.8320.092-0.763-20.857-8.7596.193
113G_DG17:C5_I0.235-0.24-0.207-3.765-9.3694.863
14G_DT7:DA21_H0.406-0.1280.329-4.728-4.892-19.321
18G_DT11:DA17_H-0.634-0.2150.067-9.433-13.1363.702
111G_DT15:A7_I-0.098-0.19-0.4286.883-4.1936.827

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.