6L6Y: Base Pair Morphology Parameters

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As of 13-Jan-2021 number of released structures: 11166

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NDB ID: 6L6Y PDB ID: 6L6Y

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	A_DA7:DT10_B	-0.019	-0.503	0.006	-0.308	10.936	-0.2
1	3	A_DC3:DG14_B	-0.008	-0.085	0.337	-3.471	-5.651	-0.467
1	5	A_DC5:DG12_B	-0.021	-0.409	0.393	-6.79	-9.026	4.183
1	12	A_DC12:DG5_B	0.196	0.018	0.185	4.502	-11.128	6.995
1	13	A_DC13:DG4_B	-0.194	-0.321	0.297	-3.362	-8.569	-4.743
1	1	A_DG1:DC16_B	-0.042	-0.092	-0.191	-17.026	-9.99	-3.885
1	10	A_DG10:DC7_B	-0.263	-0.091	0.079	-11.369	-6.915	3.117
1	2	A_DT2:DA15_B	-0.273	-0.266	0.58	-7.342	-13.184	-0.81
1	4	A_DT4:DA13_B	-0.047	0.152	-0.688	14.333	-5.675	11.599
1	6	A_DT6:DA11_B	-0.429	-0.285	0.485	-5.457	3.776	2.464
1	8	A_DT8:DA9_B	-0.132	-0.025	0.159	25.394	15.585	-2.026
1	9	A_DT9:DA8_B	0.246	-0.356	0.608	-21.968	-11.134	1.639
1	11	A_DT11:DA6_B	0.198	-0.221	0.094	-4.793	-5.156	1.17
1	14	A_DT14:DA3_B	0.38	0.781	-0.549	18.033	-13.143	1.895
1	20	C_DA7:DT10_E	0.517	-0.136	0.258	11.408	9.025	6.461
1	16	C_DC3:DG14_E	0.135	0.674	-1.576	-20.235	-9.131	-21.604
1	18	C_DC5:DG12_E	-0.455	0.102	-0.276	-10.216	-10.533	-6.476
1	25	C_DC12:DG5_E	0.302	-0.286	0.105	-1.463	-17.107	6.398
1	26	C_DC13:DG4_E	-0.828	0.241	0.329	-1.485	-4.516	4.823
1	15	C_DG1:DC16_E	-0.804	-0.614	0.15	-24.728	-57.545	18.574
1	23	C_DG10:DC7_E	-0.184	0.136	-0.201	-20.887	-10.026	-1.033
1	28	C_DG15:DC2_E	-1.241	-0.316	0.254	10.095	-11.647	-0.16
1	17	C_DT4:DA13_E	-0.567	0.802	-0.339	-17.376	-18.433	4.675
1	19	C_DT6:DA11_E	-0.32	-0.481	-0.313	-3.151	-0.233	0.551
1	21	C_DT8:DA9_E	-0.217	-0.392	0.504	31.709	25.576	-5.06
1	22	C_DT9:DA8_E	-0.552	-0.229	0.69	-13.59	-9.039	2.415
1	24	C_DT11:DA6_E	0.09	-0.228	0.076	-6.905	-11.425	3.72
1	27	C_DT14:DA3_E	-0.618	-0.209	0.055	11.316	-14.087	3.378

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.