6L6Y: Base Pair Morphology Step Parameters

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NDB ID: 6L6Y PDB ID: 6L6Y

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_DA7DT8:DA9DT10_BB	0.042	-0.172	3.013	-0.081	15.581	20.392	-4.4	-0.116	2.303	37.701	0.196	25.613
1	3	AA_DC3DT4:DA13DG14_BB	1.061	0.059	2.747	11.102	2.522	38.209	-0.173	-0.418	2.929	3.753	-16.518	39.808
1	5	AA_DC5DT6:DA11DG12_BB	0.466	-0.232	3.23	3.581	3.045	32.849	-0.913	-0.22	3.227	5.35	-6.292	33.174
1	12	AA_DC12DC13:DG4DG5_BB	-1.148	-1.325	3.379	-2.398	-4.327	27.955	-1.628	1.746	3.622	-8.869	4.914	28.381
1	13	AA_DC13DT14:DA3DG4_BB	0.127	-0.001	2.48	8.754	-3.303	35.203	0.35	0.728	2.432	-5.346	-14.167	36.387
1	1	AA_DG1DT2:DA15DC16_BB	-0.108	-0.18	3.125	-6.435	1.411	28.033	-0.664	-1.164	3.06	2.864	13.056	28.781
1	10	AA_DG10DT11:DA6DC7_BB	-0.564	-0.603	3.246	-3.009	5.77	29.757	-2.283	0.483	3.117	11.07	5.773	30.444
1	2	AA_DT2DC3:DG14DA15_BB	0.2	-0.419	3.137	0.443	-3.793	34.891	-0.146	-0.267	3.166	-6.302	-0.736	35.093
1	4	AA_DT4DC5:DG12DA13_BB	-0.151	-0.424	3.887	-6.19	12.786	28.286	-3.556	-1.067	3.351	24.32	11.773	31.588
1	6	AA_DT6DA7:DT10DA11_BB	0.259	1.417	3.752	-0.346	26.132	22.334	-3.214	-0.514	3.532	50.153	0.663	34.251
1	8	AA_DT8DT9:DA8DA9_BB	0.351	0.781	5.837	0.543	48.449	31.194	-4.59	-0.307	3.932	59.137	-0.663	57.111
1	9	AA_DT9DG10:DC7DA8_BB	0.41	0.545	2.993	3.6	1.041	33.425	0.785	-0.166	3.034	1.804	-6.235	33.628
1	11	AA_DT11DC12:DG5DA6_BB	0.92	-0.313	2.953	-2.125	4.746	34.953	-1.139	-1.795	2.829	7.847	3.513	35.326
1	18	CC_DA7DT8:DA9DT10_EE	-0.065	-0.548	3.268	-1.418	10.909	16.382	-6.587	-0.457	2.424	33.769	4.39	19.712
1	14	CC_DC3DT4:DA13DG14_EE	1.467	-0.655	2.939	-3.112	8.068	25.267	-3.194	-3.863	2.422	17.791	6.863	26.683
1	16	CC_DC5DT6:DA11DG12_EE	0.582	0.03	3.069	3.453	6.328	37.518	-0.71	-0.476	3.073	9.728	-5.309	38.18
1	23	CC_DC12DC13:DG4DG5_EE	-0.247	0.08	3.4	-2.565	4.809	28.25	-0.966	-0.103	3.375	9.737	5.193	28.761
1	24	CC_DC13DT14:DA3DG4_EE	-0.171	0.693	2.964	3.169	3.834	31.456	0.623	0.843	2.994	7.017	-5.8	31.837
1	21	CC_DG10DT11:DA6DC7_EE	-0.338	-0.064	3.029	-3.538	11.521	29.572	-2.069	0.016	2.829	21.481	6.597	31.883
1	15	CC_DT4DC5:DG12DA13_EE	-0.711	-0.298	2.91	-2.737	0.941	35.308	-0.614	0.809	2.946	1.549	4.502	35.423
1	17	CC_DT6DA7:DT10DA11_EE	0.37	1.291	3.362	-3.221	22.437	19.557	-3.153	-1.53	3.138	49.218	7.065	29.854
1	19	CC_DT8DT9:DA8DA9_EE	0.791	-0.141	5.654	4.317	50.048	32.541	-4.804	-0.397	3.144	58.917	-5.082	59.273
1	20	CC_DT9DG10:DC7DA8_EE	-0.062	0.431	3.41	7.62	1.532	39.131	0.447	1.011	3.354	2.261	-11.242	39.866
1	22	CC_DT11DC12:DG5DA6_EE	0.286	-0.126	2.972	0.317	4.256	35.002	-0.78	-0.43	2.94	7.044	-0.525	35.253
1	25	CC_DT14DG15:DC2DA3_EE	-0.061	2.824	3.411	3.879	-10.297	47.084	4.219	0.364	2.758	-12.688	-4.78	48.282

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.