A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: 6LC1  PDB ID: 6LC1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14I_DA5:DT22_L-0.06-0.3910.1235.81-10.3170.291
16I_DA7:DT20_L0.401-0.1980.82513.322-10.7646.147
110I_DA11:DT16_L1.0750.064-0.0662.897-9.0343.949
116I_DA17:DT10_L0.63-0.2450.609-1.937-16.4571.704
117I_DA18:DT9_L0.5270.1210.4455.59-4.64913.007
118I_DA19:DT8_L0.502-0.270.7532.78-13.158-4.54
123I_DA24:DT3_L0.7350.3771.16416.281-25.9636.918
111I_DC12:DG15_L0.1540.007-0.1144.997-16.741-2.495
112I_DC13:DG14_L-0.5660.198-0.35211.862-15.5071.806
114I_DC15:DG12_L0.1890.089-0.236-4.705-10.06-0.042
115I_DC16:DG11_L0.087-0.071-0.247-0.946-8.4382.349
121I_DC22:DG5_L-0.341-0.2921.139-14.788-8.84-9.232
122I_DC23:DG4_L-1.333-0.0340.475-9.772-0.3090.109
11I_DG2:DC25_L-0.390.1510.3494.361-11.746-6.512
13I_DG4:DC23_L-0.264-0.4510.7511.208-13.677-1.244
120I_DG21:DC6_L-0.267-0.390.534-9.045-4.49-2.594
124I_DG25:DC2_L0.005-0.3350.8429.008-14.191-7.306
125I_DG26:DC1_L-0.3670.2060.123-0.871-20.28810.004
12I_DT3:DA24_L-0.21-0.0350.039-0.387-21.167-0.431
15I_DT6:DA21_L0.972-0.276-0.0365.972-11.527-0.21
17I_DT8:DA19_L-0.3390.1050.3994.382-13.1221.074
18I_DT9:DA18_L-0.9020.4861.232-29.51-15.21810.559
19I_DT10:DA17_L0.181-0.1240.243-11.226-18.3773.243
113I_DT14:DA13_L0.0050.327-0.18211.61-15.41-10.776
119I_DT20:DA7_L-0.248-0.2560.79-6.223-7.0311.247
132C_DA8:DT20_F0.492-0.1130.51210.652-9.64611.842
138C_DA14:DT14_F-0.30.021-0.108-5.051-17.950.502
141C_DA18:DT10_F0.6250.369-0.155-5.295-4.48714.652
142C_DA19:DT9_F1.0110.2230.6016.063-15.7136.471
143C_DA20:DT8_F0.2-0.3230.60910.149-28.204-3.315
145C_DA22:DT6_F-0.709-0.3650.9442.1841.353-2.381
148C_DA25:DT3_F1.5250.4650.67525.177-27.7776.343
126C_DC2:DG26_F0.017-0.378-0.073-3.334-26.431-6.56
127C_DC3:DG25_F-0.1880.4470.328-14.15-13.6263.186
131C_DC7:DG21_F0.604-0.277-0.2032.029-3.641-5.273
147C_DC24:DG4_F-0.0010.3490.858-11.979-16.18617.291
129C_DG5:DC23_F-0.406-0.4220.193-0.843-16.278-5.161
130C_DG6:DC22_F0.193-0.2550.2763.835-3.428-5.912
136C_DG12:DC16_F-0.379-0.0260.57711.801-15.5747.624
137C_DG13:DC15_F-0.333-0.226-0.093-2.124-12.372-0.073
139C_DG15:DC13_F1.2380.1220.8158.537-14.7325.603
128C_DT4:DA24_F-0.5540.0840.406-17.666-18.7962.564
133C_DT9:DA19_F-0.074-0.2490.346.837-18.7221.241
134C_DT10:DA18_F-0.056-0.0020.61-10.774-14.78110.344
135C_DT11:DA17_F-0.162-0.160.476-5.119-18.5428.555
140C_DT17:DA11_F-0.7860.434-0.2485.635-22.804-2.665
144C_DT21:DA7_F-0.365-0.30.49-6.868-21.6736.023
146C_DT23:DA5_F-0.252-0.4041.033-7.779-5.909-7.086

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.