A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: 6LC1  PDB ID: 6LC1 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14II_DA5DT6:DA21DT22_LL0.238-0.6723.3851.953-0.50539.263-0.936-0.1123.401-0.751-2.90439.313
16II_DA7DT8:DA19DT20_LL-0.78-1.4733.453-0.4433.86432.067-3.3551.3223.2686.9620.79832.296
110II_DA11DC12:DG15DT16_LL-0.37-0.1513.137-1.0760.67430.557-0.4140.4973.1441.2782.0430.583
116II_DA17DA18:DT9DT10_LL0.935-0.1133.3271.351-0.05329.162-0.213-1.5543.366-0.106-2.68129.193
117II_DA18DA19:DT8DT9_LL-1.173-0.6193.188-6.473-0.36337.456-0.9050.9723.343-0.569.98837.993
118II_DA19DT20:DA7DT8_LL0.341-1.3813.5591.3790.48231.87-2.608-0.3483.5490.877-2.5131.902
123II_DA24DG25:DC2DT3_LL-0.132-0.7083.288-0.0496.48728.354-2.8090.2533.05413.0290.09829.072
111II_DC12DC13:DG14DG15_LL-0.011-0.3853.0422.5045.70133.082-1.5210.3952.9299.904-4.3533.646
112II_DC13DT14:DA13DG14_LL-0.531-0.2353.446-2.5669.84733.481-1.9550.4773.27916.6224.33134.951
114II_DC15DC16:DG11DG12_LL0.9910.0653.133.0859.29631.556-1.424-1.2333.10516.599-5.50933.004
115II_DC16DA17:DT10DG11_LL-0.6330.7633.51-8.26812.98136.113-0.633-0.1833.62119.86612.65339.155
121II_DC22DC23:DG4DG5_LL0.6010.0423.2796.209-2.40531.940.5020.0313.322-4.311-11.13232.609
122II_DC23DA24:DT3DG4_LL-0.8791.4553.004-2.591-5.0347.1972.1710.9022.885-6.2563.22247.516
11II_DG2DT3:DA24DC25_LL0.29-0.5863.1564.1528.40534.309-2.1270.1012.94913.928-6.8835.53
13II_DG4DA5:DT22DC23_LL-0.5420.0883.4891.77-3.53133.3380.7661.2473.429-6.129-3.07133.565
120II_DG21DC22:DG5DC6_LL-0.639-1.0393.575-3.4010.25733.697-1.8290.4953.6130.4425.84833.865
124II_DG25DG26:DC1DC2_LL0.8110.3933.6198.7071.6941.6320.348-0.1183.722.345-12.08642.525
12II_DT3DG4:DC23DA24_LL0.990.8253.126-4.4935.32237.8680.62-2.0353.0768.1176.85238.48
15II_DT6DA7:DT20DA21_LL0.349-0.3923.12-5.511.8532.964-0.968-1.4642.9983.2299.61833.459
17II_DT8DT9:DA18DA19_LL0.976-0.4373.998-1.746-0.07834.625-0.718-1.9643.947-0.1312.93234.668
18II_DT9DT10:DA17DA18_LL-0.7280.0192.9453.172.0632.322-0.2861.7922.8583.685-5.67132.537
19II_DT10DA11:DT16DA17_LL0.3950.7783.1993.5346.98138.1940.317-0.1623.30810.533-5.33338.958
113II_DT14DC15:DG12DA13_LL0.889-0.0723.6384.9147.01438.669-1.034-0.6643.65210.437-7.31239.571
119II_DT20DG21:DC6DA7_LL-0.027-1.1033.2393.4180.85534.274-1.9930.573.1941.446-5.7834.449
131CC_DA8DT9:DA19DT20_FF-0.792-1.1773.334-1.1945.09732.08-2.9921.2073.1419.1472.14332.493
137CC_DA14DG15:DC13DT14_FF0.3380.1173.017-9.2437.57539.179-0.594-1.4132.84310.98913.40940.893
140CC_DA18DA19:DT9DT10_FF0.3490.0653.041-5.5619.93328.77-1.662-1.6542.79519.07310.67830.896
141CC_DA19DA20:DT8DT9_FF-0.716-0.7172.957-3.980.83233.48-1.360.6433.0021.4386.87733.719
142CC_DA20DT21:DA7DT8_FF0.541-0.9133.9131.4442.54732.191-2.177-0.6683.8524.582-2.59832.32
144CC_DA22DT23:DA5DT6_FF-0.407-1.2143.74-0.834-4.99834.377-1.1390.5323.881-8.41.40134.738
125CC_DC2DC3:DG25DG26_FF0.469-0.4043.1794.42610.78737.692-1.833-0.192.99116.228-6.65839.391
126CC_DC3DT4:DA24DG25_FF-0.212-0.263.081.3294.11434.843-1.0080.5383.0216.837-2.20935.102
130CC_DC7DA8:DT20DG21_FF0.635-0.1843.285-6.1082.43832.165-0.738-2.1583.0944.34410.88232.813
146CC_DC24DA25:DT3DG4_FF-1.1091.7062.7287.5430.27142.2952.312.122.5140.372-10.35542.933
128CC_DG5DG6:DC22DC23_FF-1.130.5843.178-5.604-5.41534.871.7251.0453.192-8.8999.20935.704
129CC_DG6DC7:DG21DC22_FF0.271-0.7743.4493.7142.37336.728-1.5560.0983.4043.749-5.86836.983
135CC_DG12DG13:DC15DC16_FF-0.839-0.0123.5520.9111.99632.474-0.3991.6693.5213.564-1.62732.546
136CC_DG13DA14:DT14DC15_FF-0.536-0.0453.353-1.0754.84337.508-0.7080.6853.3367.4911.66437.823
138CC_DG15DT17:DA11DC13_FF-0.427-0.9876.2589.1019.51258.557-1.8811.2815.9299.592-9.17859.89
127CC_DT4DG5:DC23DA24_FF0.4981.3563.078-1.1672.86939.6631.675-0.8613.1494.2211.71639.778
132CC_DT9DT10:DA18DA19_FF0.966-0.3143.6312.358-4.1537.2390.122-1.1553.696-6.467-3.67437.533
133CC_DT10DT11:DA17DA18_FF-0.2940.1043.1621.8226.95428.639-1.2290.9533.07713.786-3.61229.509
134CC_DT11DG12:DC16DA17_FF0.0290.8062.936-0.95112.38535.792-0.255-0.1593.03819.4441.49337.82
139CC_DT17DA18:DT10DA11_FF0.361.3143.8532.0669.9742.8670.6-0.2414.05813.416-2.7844.005
143CC_DT21DA22:DT6DA7_FF-0.003-0.932.945-1.993-1.04433.828-1.444-0.2852.967-1.7923.42133.901
145CC_DT23DC24:DG4DA5_FF1.6440.4673.5569.694-5.6540.3511.327-1.1483.741-8.005-13.73541.819

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.