6LMJ: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6LMJ PDB ID: 6LMJ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	C_DA6:DT15_D	0.391	0.19	0.16	13.119	-10.403	3.33
1	7	C_DA9:DT13_D	0.119	0.24	0.009	0.996	-6.257	7.956
1	8	C_DA10:DT12_D	0.758	0.206	0.218	-1.637	-21.688	8.161
1	17	C_DA19:DT1_D	0.497	0.114	0.202	10.132	-29.05	0.418
1	3	C_DC3:DG17_D	0.189	0.113	0.417	4.584	-26.554	5.661
1	6	C_DC8:DG14_D	-0.005	0.046	-0.268	21.506	-20.195	-4.722
1	16	C_DC18:DG2_D	0.551	-0.076	-0.131	-0.334	-3.527	-1.798
1	2	C_DG2:DC18_D	0.017	0.079	-0.357	-4.329	-11.653	4.364
1	12	C_DG14:DC8_D	-0.603	-0.139	-0.167	-5.474	-15.712	-5.13
1	15	C_DG17:DC3_D	-0.03	0.081	0.229	-12.244	-21.965	1.8
1	1	C_DT1:DA19_D	-0.535	0.1	-0.114	-5.036	-19.869	1.444
1	4	C_DT5:DT16_D	1.179	-1.771	0.633	-10.647	-26.665	10.222
1	9	C_DT11:DT11_D	0.695	-1.534	0.344	-5.257	-18.571	10.234
1	10	C_DT12:DA10_D	-0.887	0.118	-0.132	5.607	-10.541	3.964
1	11	C_DT13:DA9_D	-0.031	0.204	0.144	0.244	-13.547	6.284
1	13	C_DT15:DA6_D	0.047	0.113	0.244	-17.243	-13.215	-2.265
1	14	C_DT16:DT5_D	-1.598	-1.968	0.303	-3.642	-20.883	3.041

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.