A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6LMJ  PDB ID: 6LMJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15C_DA6:DT15_D0.3910.190.1613.119-10.4033.33
17C_DA9:DT13_D0.1190.240.0090.996-6.2577.956
18C_DA10:DT12_D0.7580.2060.218-1.637-21.6888.161
117C_DA19:DT1_D0.4970.1140.20210.132-29.050.418
13C_DC3:DG17_D0.1890.1130.4174.584-26.5545.661
16C_DC8:DG14_D-0.0050.046-0.26821.506-20.195-4.722
116C_DC18:DG2_D0.551-0.076-0.131-0.334-3.527-1.798
12C_DG2:DC18_D0.0170.079-0.357-4.329-11.6534.364
112C_DG14:DC8_D-0.603-0.139-0.167-5.474-15.712-5.13
115C_DG17:DC3_D-0.030.0810.229-12.244-21.9651.8
11C_DT1:DA19_D-0.5350.1-0.114-5.036-19.8691.444
14C_DT5:DT16_D1.179-1.7710.633-10.647-26.66510.222
19C_DT11:DT11_D0.695-1.5340.344-5.257-18.57110.234
110C_DT12:DA10_D-0.8870.118-0.1325.607-10.5413.964
111C_DT13:DA9_D-0.0310.2040.1440.244-13.5476.284
113C_DT15:DA6_D0.0470.1130.244-17.243-13.215-2.265
114C_DT16:DT5_D-1.598-1.9680.303-3.642-20.8833.041

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.