A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Sep-2022 number of released structures: 12282
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NDB ID: 6LVR  PDB ID: 6LVR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18D_5MC49:G65_D-0.2080.2160.1125.938-15.2332.362
113D_5MU54:1MA58_D4.513-1.990.355-4.93814.268-93.311
15D_A5:U68_D-0.165-0.0920.0433.269-18.2267.57
118D_A23:U12_D-0.196-0.0860.68914.232-11.118-7.785
124D_A29:U41_D0.4080.363-0.0271.858-3.6116.163
12D_C2:G71_D0.329-0.195-0.267-7.002-4.4570.805
120D_C25:2MG10_D0.5280.206-0.5411.28-10.327.831
122D_C27:G43_D-0.087-0.137-0.14811.991-18.763-4.95
123D_C28:G42_D0.210.398-0.2369.742-9.233.8
11D_G1:C72_D-0.052-0.082-0.765-15.862-3.0940.435
13D_G3:C70_D0.686-0.039-0.639-10.891-9.1791.605
14D_G4:U69_D-2.117-0.5990.0734.324-3.7711.259
115D_G15:C48_D-0.3823.3420.58311.7161.829173.425
127D_G19:C56_D-0.073-0.3840.224-25.708-25.328-1.618
117D_G22:C13_D-0.93-0.0520.165-0.601-8.2512.851
119D_G24:C11_D-0.024-0.317-0.2397.868-10.514-0.238
125D_G30:5MC40_D-0.4240.176-0.646-20.103-19.1996.258
110D_G51:C63_D-0.241-0.133-0.019-5.028-9.7651.419
112D_G53:C61_D0.4350.083-0.701-21.295-18.7837.008
121D_M2G26:A44_D-0.5391.509-0.7125.209-28.653-14.148
126D_OMC32:A38_D7.135-2.3311.431-17.02211.61112.8
114D_PSU55:G18_D0.265-5.460.53920.39211.335-101.437
16D_U6:A67_D0.12-0.028-0.142-0.412-22.8293.882
17D_U7:A66_D-0.1030.1890.2032.348-7.515-0.076
116D_U8:A14_D4.614-1.755-0.16118.917-0.936-111.016
19D_U50:A64_D0.328-0.1480.319-1.946-4.0812.01
111D_U52:A62_D0.438-0.1390.0490.185-15.7724.187
135B_5MC49:G65_B0.608-0.1760.3230.201-7.045-1.821
140B_5MU54:1MA58_B4.601-2.3580.43-6.74517.96-87.245
132B_A5:U68_B-0.289-0.10.1913.473-20.8186.531
145B_A23:U12_B0.050.2950.32115.071-16.463-5.777
151B_A29:U41_B-0.020.244-0.4237.251-1.8384.355
129B_C2:G71_B0.338-0.082-0.089-5.105-6.904-2.437
147B_C25:2MG10_B1.191-0.099-0.6129.336-9.5384.572
149B_C27:G43_B0.7470.605-0.31421.08-30.9171.532
150B_C28:G42_B-0.3520.428-0.22514.734-6.6734.915
128B_G1:C72_B-0.208-0.203-0.254-7.187-8.2214.463
130B_G3:C70_B0.209-0.007-0.559-14.295-13.681-3.252
131B_G4:U69_B-2.591-0.6810.0594.132-6.8063.148
142B_G15:C48_B-0.3892.7630.4195.20714.194154.838
154B_G19:C56_B-0.3-0.2210.019-29.274-27.522.548
144B_G22:C13_B-1.3050.1570.06-7.055-11.425.222
146B_G24:C11_B-0.061-0.273-0.0694.419-13.3660.067
152B_G30:5MC40_B-0.4290.062-0.619-18.721-19.3155.173
137B_G51:C63_B-0.132-0.2070.07-6.921-11.7581.072
139B_G53:C61_B-0.138-0.019-0.596-23.009-10.9075.288
148B_M2G26:A44_B-0.6991.928-0.47722.857-27.209-13.323
153B_OMC32:A38_B6.971-2.1290.644-4.3586.50910.634
141B_PSU55:G18_B0.598-5.6720.21319.42616.388-99.963
133B_U6:A67_B-0.1680.1050.4171.686-24.0357.064
134B_U7:A66_B-0.2760.030.509-4.625-6.631-6.695
143B_U8:A14_B4.597-1.8880.4322.7128.354-107.137
136B_U50:A64_B-0.62-0.297-0.0665.167-7.449-3.346
138B_U52:A62_B0.8890.0130.248-0.767-13.6865.868

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.