A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Sep-2022 number of released structures: 12282
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NDB ID: 6LVR  PDB ID: 6LVR 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18DD_5MC49U50:A64G65_DD-0.099-1.7393.405-3.2233.27336.677-3.193-0.2873.245.1765.09736.954
113DD_5MU54PSU55:G181MA58_DD1.653-2.0523.368.7185.34644.897-3.106-1.3343.3556.894-11.24345.989
15DD_A5U6:A67U68_DD-0.037-1.3553.3332.8266.71733.477-3.3380.4983.011.492-4.83534.239
117DD_A23G24:C11U12_DD0.303-1.5243.4982.6039.31736.331-3.604-0.1253.04314.625-4.08637.555
123DD_A29G30:5MC40U41_DD0.405-2.0543.7276.46210.04630.353-5.5150.472.9418.32-11.78332.567
12DD_C2G3:C70G71_DD0.039-1.1923.3791.87517.58332.426-4.1580.182.43628.958-3.08836.82
119DD_C25M2G26:A442MG10_DD2.471-2.9173.516-20.24316.53155.83-3.536-3.2481.75816.6820.42761.196
121DD_C27C28:G42G43_DD0.447-1.4583.2910.2375.63435.72-3.123-0.6883.0369.114-0.38436.148
122DD_C28A29:U41G42_DD0.186-1.7363.46-1.1875.13829.505-4.431-0.6093.119.9882.30729.962
11DD_G1C2:G71C72_DD-0.538-1.8193.282-4.048-0.63334.535-2.9460.2723.354-1.0626.78834.769
13DD_G3G4:U69C70_DD0.098-1.5952.712-7.8337.20319.964-6.026-2.3751.86219.12120.79522.598
14DD_G4A5:U68U69_DD-0.157-1.1113.359-0.6853.91241.224-1.9950.1493.2465.5410.9741.407
114DD_G15U8:A14C48_DD1.861-2.206-3.706145.87189.183119.658-0.634-1.699-2.98744.909-73.455175.467
116DD_G22A23:U12C13_DD-1.874-2.0962.913-9.239-4.59425.694-3.2191.5783.667-9.8419.78927.657
118DD_G24C25:2MG10C11_DD1.245-1.4913.0853.1657.06736.817-3.159-1.5542.85411.039-4.94437.595
124DD_G30OMC32:A385MC40_DD0.655-1.7256.149-1.52318.96891.964-1.833-0.5025.79313.0781.0593.477
110DD_G51U52:A62C63_DD0.398-1.3563.1160.9385.24934.762-2.969-0.5292.8968.722-1.55835.156
112DD_G535MU54:1MA58C61_DD-2.578-1.9843.144-4.6731.70985.61-1.4961.7923.2221.2563.43685.726
120DD_M2G26C27:G43A44_DD0.571-1.3063.497-6.7242.09138.188-2.233-1.7163.283.16410.17238.808
16DD_U6U7:A66A67_DD-0.014-1.2713.2330.70414.2130.358-4.3380.1312.41325.453-1.26233.456
17DD_U75MC49:G65A66_DD-0.102-1.5783.0683.1583.57333.959-3.1880.6262.8716.08-5.37334.282
115DD_U8G22:C13A14_DD2.311-0.4623.794-1.278-3.15252.038-0.284-2.7273.76-3.5891.45452.141
19DD_U50G51:C63A64_DD-0.167-1.7243.2163.9957.37128.453-4.7951.0982.64814.6-7.91429.638
111DD_U52G53:C61A62_DD1.255-2.123.9128.85611.35229.933-5.894-0.5013.1620.55-16.03133.144
132BB_5MC49U50:A64G65_BB-0.383-2.0662.9632.1122.51927.307-4.8851.2592.7285.312-4.45427.501
137BB_5MU54PSU55:G181MA58_BB1.493-1.7433.3826.7072.23545.688-2.422-1.33.4722.858-8.57746.202
129BB_A5U6:A67U68_BB0.063-1.2413.16-0.5246.51533.076-3.127-0.1872.8711.3050.90933.698
141BB_A23G24:C11U12_BB0.179-1.3293.408-1.23213.7934.89-3.825-0.4352.70321.9591.96237.457
147BB_A29G30:5MC40U41_BB0.396-1.9453.9722.5589.87532.516-5.11-0.2143.27917.117-4.43334.037
126BB_C2G3:C70G71_BB-0.014-1.1943.4294.119.32230.132-4.5690.5812.26233.077-7.01935.903
143BB_C25M2G26:A442MG10_BB2.384-2.9893.38-20.60216.6654.476-3.644-3.1961.5717.11621.16560.131
145BB_C27C28:G42G43_BB-0.069-1.4053.354-3.48110.02532.473-3.93-0.4162.80217.3586.02834.119
146BB_C28A29:U41G42_BB0.092-1.8293.5910.5917.10929.064-5.066-0.0513.06813.903-1.15629.909
125BB_G1C2:G71C72_BB-0.799-1.8433.621-2.8673.62135.915-3.5210.8473.4765.8424.62736.201
127BB_G3G4:U69C70_BB0.463-1.3812.588-8.7737.94519.857-5.359-3.2651.58520.81822.98823.087
128BB_G4A5:U68U69_BB-0.287-0.9753.339-2.2934.38841.726-1.8190.163.2356.1343.20542.006
138BB_G15U8:A14C48_BB3.831-0.771-2.742141.08297.606168.222-0.31-2.025-2.4548.816-70.559179.134
140BB_G22A23:U12C13_BB-1.773-1.5172.952-6.364-0.32130.828-2.742.1273.259-0.59511.81431.464
142BB_G24C25:2MG10C11_BB1.025-1.4263.2043.155.29140.309-2.611-1.1373.0697.624-4.53840.757
148BB_G30OMC32:A385MC40_BB0.554-1.5996.0753.61219.26988.613-1.836-0.2585.73213.655-2.5690.314
134BB_G51U52:A62C63_BB0.324-1.5623.226-0.8580.66433.984-2.775-0.6883.1871.1361.46734.0
136BB_G535MU54:1MA58C61_BB-2.227-2.2353.154-2.539-0.37187.139-1.6131.5613.213-0.2691.84187.17
144BB_M2G26C27:G43A44_BB0.999-1.0583.044-0.8222.3538.904-1.847-1.5892.9573.5241.23338.98
130BB_U6U7:A66A67_BB-0.809-1.563.273-2.38514.67832.204-4.5391.012.4124.8734.04135.389
131BB_U75MC49:G65A66_BB0.375-2.1223.0732.836-3.95237.794-2.763-0.2233.288-6.07-4.35538.095
139BB_U8G22:C13A14_BB2.725-0.2183.5612.228-3.32251.773-0.002-2.9483.674-3.798-2.54751.917
133BB_U50G51:C63A64_BB-0.097-1.5813.363-1.51411.69635.597-3.932-0.0392.72918.5152.39737.44
135BB_U52G53:C61A62_BB1.259-2.5943.9048.8068.60925.237-7.66-0.2413.12618.374-18.79428.038

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.