6M0X: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6M0X PDB ID: 6M0X

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_A6:DT23_C	0.625	-0.16	-0.109	-4.665	-11.876	-2.701
1	7	B_A7:DT22_C	-0.015	-0.098	-0.17	0.913	-21.15	6.061
1	9	B_A9:DT20_C	-0.223	-0.202	-0.201	-11.895	-18.629	-2.989
1	12	B_A12:DT17_C	-0.019	-0.035	0.143	-8.454	-14.04	4.822
1	13	B_A13:DT16_C	0.029	-0.025	0.268	1.645	-6.415	0.368
1	16	B_A16:DT13_C	0.183	-0.224	-0.314	-5.587	-6.461	1.156
1	19	B_A19:DT10_C	-0.307	0.108	-0.305	3.288	-4.562	4.99
1	29	B_A29:U42_B	-0.126	0.151	0.254	-0.869	-19.695	17.969
1	34	B_A52:G64_B	-7.624	-5.402	-0.063	-3.003	-4.727	-26.602
1	4	B_C4:DG25_C	0.492	-0.079	-0.256	-1.128	3.648	2.525
1	15	B_C15:DG14_C	0.269	-0.166	-0.056	11.011	-11.656	1.691
1	30	B_C30:A39_B	-2.301	0.945	-0.298	26.575	-22.265	0.179
1	32	B_C32:G37_B	0.147	-0.292	-0.04	5.341	-12.994	1.083
1	37	B_C55:G61_B	0.247	-0.103	0.13	-4.291	-2.435	-1.213
1	1	B_G1:DC28_C	-0.279	0.31	-0.237	-13.197	-5.693	5.457
1	3	B_G3:DC26_C	-0.387	-0.012	-0.75	3.213	-11.189	2.441
1	8	B_G8:DC21_C	-0.127	-0.225	-0.203	-8.161	-18.986	-4.588
1	17	B_G17:DC12_C	-0.282	-0.102	-0.644	-12.105	-0.262	0.245
1	18	B_G18:DC11_C	-0.358	-0.152	-0.556	-14.971	-9.572	1.379
1	21	B_G21:U50_B	-2.533	-0.506	0.175	3.685	0.196	-2.857
1	27	B_G27:C44_B	-0.1	-0.194	0.208	-3.788	-10.531	-3.038
1	33	B_G33:A36_B	7.682	-5.268	0.219	21.299	2.493	-36.785
1	35	B_G53:C63_B	-0.14	0.11	-0.648	-14.567	-1.791	1.586
1	36	B_G54:C62_B	-0.447	-0.083	-0.307	-5.723	-3.45	3.544
1	2	B_U2:DA27_C	0.128	0.286	0.375	1.09	-3.343	13.519
1	5	B_U5:DA24_C	0.393	-0.222	0.1	-4.322	-15.687	0.532
1	10	B_U10:DA19_C	-0.635	-0.28	0.164	-5.605	-9.416	-2.843
1	11	B_U11:DA18_C	-0.079	0.146	0.073	3.042	-5.562	-0.824
1	14	B_U14:DA15_C	0.098	-0.007	-0.182	9.741	-2.493	5.714
1	20	B_U20:DA9_C	0.117	0.094	-0.462	26.507	-4.196	9.896
1	22	B_U22:A49_B	-0.254	-0.045	-0.011	4.602	-7.418	-1.937
1	23	B_U23:G48_B	2.481	-0.377	-0.154	9.847	-10.657	-1.609
1	24	B_U24:A47_B	-0.179	-0.136	0.31	-6.058	-24.066	6.448
1	25	B_U25:A46_B	0.219	-0.031	0.577	-5.474	-13.077	5.131
1	26	B_U26:A45_B	0.224	-0.109	0.278	-0.279	-10.012	0.546
1	28	B_U28:A43_B	-0.177	-0.02	0.173	0.882	-11.942	6.243
1	31	B_U31:A38_B	0.114	-0.122	-0.208	13.157	-19.686	-4.032
1	38	B_U56:A59_B	-0.149	0.049	-0.548	9.095	25.19	6.078
1	40	C_DC2:DG7_D	-0.597	0.074	0.289	-1.35	-12.425	-2.166
1	42	C_DC4:DG5_D	0.119	-0.127	0.604	-20.272	-16.093	-2.691
1	43	C_DC5:DG4_D	0.179	-0.142	0.199	-17.747	-0.82	-0.956
1	39	C_DG1:DC8_D	-0.826	-0.191	-0.195	-12.085	1.009	1.82
1	41	C_DT3:DA6_D	0.053	-0.196	0.508	-1.358	-16.667	-0.374
1	44	C_DT6:DA3_D	-0.215	0.114	0.134	-5.08	-12.999	3.415
1	45	C_DT7:DA2_D	-0.018	-0.061	0.261	-3.335	-3.261	11.532
1	46	C_DT8:DA1_D	0.102	0.144	-0.177	12.72	-2.703	10.869

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.