A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: 6M0X  PDB ID: 6M0X 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A6:DT23_C0.625-0.16-0.109-4.665-11.876-2.701
17B_A7:DT22_C-0.015-0.098-0.170.913-21.156.061
19B_A9:DT20_C-0.223-0.202-0.201-11.895-18.629-2.989
112B_A12:DT17_C-0.019-0.0350.143-8.454-14.044.822
113B_A13:DT16_C0.029-0.0250.2681.645-6.4150.368
116B_A16:DT13_C0.183-0.224-0.314-5.587-6.4611.156
119B_A19:DT10_C-0.3070.108-0.3053.288-4.5624.99
129B_A29:U42_B-0.1260.1510.254-0.869-19.69517.969
134B_A52:G64_B-7.624-5.402-0.063-3.003-4.727-26.602
14B_C4:DG25_C0.492-0.079-0.256-1.1283.6482.525
115B_C15:DG14_C0.269-0.166-0.05611.011-11.6561.691
130B_C30:A39_B-2.3010.945-0.29826.575-22.2650.179
132B_C32:G37_B0.147-0.292-0.045.341-12.9941.083
137B_C55:G61_B0.247-0.1030.13-4.291-2.435-1.213
11B_G1:DC28_C-0.2790.31-0.237-13.197-5.6935.457
13B_G3:DC26_C-0.387-0.012-0.753.213-11.1892.441
18B_G8:DC21_C-0.127-0.225-0.203-8.161-18.986-4.588
117B_G17:DC12_C-0.282-0.102-0.644-12.105-0.2620.245
118B_G18:DC11_C-0.358-0.152-0.556-14.971-9.5721.379
121B_G21:U50_B-2.533-0.5060.1753.6850.196-2.857
127B_G27:C44_B-0.1-0.1940.208-3.788-10.531-3.038
133B_G33:A36_B7.682-5.2680.21921.2992.493-36.785
135B_G53:C63_B-0.140.11-0.648-14.567-1.7911.586
136B_G54:C62_B-0.447-0.083-0.307-5.723-3.453.544
12B_U2:DA27_C0.1280.2860.3751.09-3.34313.519
15B_U5:DA24_C0.393-0.2220.1-4.322-15.6870.532
110B_U10:DA19_C-0.635-0.280.164-5.605-9.416-2.843
111B_U11:DA18_C-0.0790.1460.0733.042-5.562-0.824
114B_U14:DA15_C0.098-0.007-0.1829.741-2.4935.714
120B_U20:DA9_C0.1170.094-0.46226.507-4.1969.896
122B_U22:A49_B-0.254-0.045-0.0114.602-7.418-1.937
123B_U23:G48_B2.481-0.377-0.1549.847-10.657-1.609
124B_U24:A47_B-0.179-0.1360.31-6.058-24.0666.448
125B_U25:A46_B0.219-0.0310.577-5.474-13.0775.131
126B_U26:A45_B0.224-0.1090.278-0.279-10.0120.546
128B_U28:A43_B-0.177-0.020.1730.882-11.9426.243
131B_U31:A38_B0.114-0.122-0.20813.157-19.686-4.032
138B_U56:A59_B-0.1490.049-0.5489.09525.196.078
140C_DC2:DG7_D-0.5970.0740.289-1.35-12.425-2.166
142C_DC4:DG5_D0.119-0.1270.604-20.272-16.093-2.691
143C_DC5:DG4_D0.179-0.1420.199-17.747-0.82-0.956
139C_DG1:DC8_D-0.826-0.191-0.195-12.0851.0091.82
141C_DT3:DA6_D0.053-0.1960.508-1.358-16.667-0.374
144C_DT6:DA3_D-0.2150.1140.134-5.08-12.9993.415
145C_DT7:DA2_D-0.018-0.0610.261-3.335-3.26111.532
146C_DT8:DA1_D0.1020.144-0.17712.72-2.70310.869

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.