6M0X: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6M0X PDB ID: 6M0X

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_A6A7:DT22DT23_CC	0.392	-1.164	3.227	3.272	3.045	26.428	-3.278	-0.021	3.1	6.599	-7.093	26.797
1	7	BB_A7G8:DC21DT22_CC	-0.474	-1.328	3.503	-2.608	11.377	35.457	-3.612	0.391	2.978	18.086	4.146	37.27
1	9	BB_A9U10:DA19DT20_CC	0.886	-1.509	3.172	0.165	3.693	27.682	-3.955	-1.8	2.955	7.676	-0.342	27.923
1	12	BB_A12A13:DT16DT17_CC	-0.37	-1.157	3.008	-1.96	0.872	32.75	-2.185	0.346	2.994	1.544	3.471	32.819
1	13	BB_A13U14:DA15DT16_CC	0.613	-1.599	3.136	2.032	4.964	28.111	-4.274	-0.814	2.853	10.104	-4.136	28.608
1	16	BB_A16G17:DC12DT13_CC	0.765	-2.338	3.638	2.702	5.426	26.855	-6.317	-0.909	3.173	11.498	-5.725	27.518
1	19	BB_A19U20:DA9DT10_CC	1.319	-2.802	2.987	-4.019	-3.016	15.287	-7.958	-7.452	3.034	-10.958	14.602	16.087
1	29	BB_A29C30:A39U42_BB	2.688	-1.239	3.626	-23.77	9.305	54.377	-1.683	-3.818	2.163	9.612	24.556	59.654
1	33	BB_A52G53:C63G64_BB	3.76	-1.308	4.05	-1.547	16.368	52.954	-2.54	-4.159	3.436	17.874	1.689	55.271
1	4	BB_C4U5:DA24DG25_CC	0.298	-1.605	3.54	-2.02	18.587	30.98	-5.108	-0.755	2.231	31.465	3.42	36.066
1	15	BB_C15A16:DT13DG14_CC	-0.362	-2.021	3.794	0.41	7.646	30.963	-5.194	0.74	3.211	14.054	-0.754	31.873
1	30	BB_C30U31:A38A39_BB	-0.346	-1.046	3.752	-4.712	13.725	45.38	-2.527	0.007	3.338	17.275	5.931	47.526
1	32	BB_C32G33:A36G37_BB	-3.398	-1.531	3.029	-4.37	2.272	54.626	-1.792	3.44	3.21	2.47	4.751	54.831
1	36	BB_C55U56:A59G61_BB	-0.358	-1.964	3.183	4.341	4.555	13.797	-10.646	4.406	2.209	17.801	-16.963	15.157
1	1	BB_G1U2:DA27DC28_CC	1.762	-1.125	2.883	-2.932	6.761	33.933	-2.743	-3.326	2.464	11.418	4.951	34.701
1	3	BB_G3C4:DG25DC26_CC	-0.454	-1.158	3.512	-4.808	18.254	30.434	-4.522	0.048	2.489	31.281	8.238	35.695
1	8	BB_G8A9:DT20DC21_CC	0.418	-1.451	3.363	3.088	5.103	29.16	-3.892	-0.17	3.096	10.003	-6.054	29.751
1	17	BB_G17G18:DC11DC12_CC	-0.683	-2.37	3.629	1.757	1.467	23.759	-6.249	2.271	3.42	3.552	-4.254	23.867
1	18	BB_G18A19:DT10DC11_CC	0.952	-0.995	3.074	2.594	-3.141	31.456	-1.263	-1.282	3.222	-5.763	-4.759	31.712
1	21	BB_G21U22:A49U50_BB	-0.575	-1.984	3.271	-2.925	7.027	37.315	-3.893	0.528	2.899	10.844	4.514	38.056
1	27	BB_G27U28:A43C44_BB	0.442	-1.107	3.121	-0.199	7.649	31.206	-3.257	-0.831	2.776	13.957	0.363	32.108
1	34	BB_G53G54:C62C63_BB	0.622	-2.363	3.118	-0.801	3.37	22.374	-7.119	-1.846	2.713	8.618	2.048	22.637
1	35	BB_G54C55:G61C62_BB	-0.189	-2.513	3.381	-1.102	-0.751	32.744	-4.32	0.137	3.441	-1.331	1.954	32.771
1	2	BB_U2G3:DC26DA27_CC	-1.324	-1.847	3.35	5.841	12.297	26.53	-5.823	3.635	1.989	24.826	-11.791	29.763
1	5	BB_U5A6:DT23DA24_CC	-0.692	-1.388	3.212	-0.112	13.643	31.008	-4.368	1.174	2.408	24.11	0.198	33.809
1	10	BB_U10U11:DA18DA19_CC	0.972	-2.014	3.018	3.63	1.45	28.877	-4.297	-1.199	3.012	2.891	-7.238	29.135
1	11	BB_U11A12:DT17DA18_CC	-0.115	-1.868	3.546	1.211	6.152	33.577	-4.189	0.394	3.158	10.534	-2.074	34.141
1	14	BB_U14C15:DG14DA15_CC	-0.652	-2.24	3.337	-3.965	9.156	26.87	-6.446	0.488	2.521	18.896	8.182	28.63
1	20	BB_U20G21:U50DA9_BC	3.971	-0.848	3.623	-2.613	-0.884	65.549	-0.743	-3.781	3.49	-0.816	2.413	65.6
1	22	BB_U22U23:G48A49_BB	0.158	-1.216	3.175	2.563	8.341	44.016	-2.307	0.012	2.914	11.0	-3.381	44.831
1	23	BB_U23U24:A47G48_BB	-0.324	-2.278	3.281	0.858	16.184	22.542	-7.832	0.839	1.355	36.022	-1.909	27.702
1	24	BB_U24U25:A46A47_BB	-0.031	-0.953	3.126	-3.511	7.24	35.313	-2.48	-0.409	2.871	11.747	5.697	36.19
1	25	BB_U25U26:A45A46_BB	-0.263	-1.229	3.017	0.662	4.993	31.491	-3.048	0.587	2.788	9.126	-1.209	31.881
1	26	BB_U26G27:C44A45_BB	-0.334	-1.549	3.14	-1.831	10.537	30.951	-4.37	0.312	2.508	19.046	3.31	32.704
1	28	BB_U28A29:U42A43_BB	0.653	-1.241	3.084	0.427	15.505	30.476	-4.232	-1.054	2.221	27.382	-0.754	34.112
1	31	BB_U31C32:G37A38_BB	0.364	-1.501	3.34	0.703	9.375	35.278	-3.652	-0.488	2.867	15.139	-1.135	36.471
1	38	CC_DC2DT3:DA6DG7_DD	-0.28	-0.377	3.27	-1.46	1.421	34.394	-0.857	0.245	3.261	2.401	2.466	34.452
1	40	CC_DC4DC5:DG4DG5_DD	0.596	0.322	3.398	3.587	-6.139	37.627	1.293	-0.441	3.347	-9.415	-5.501	38.269
1	41	CC_DC5DT6:DA3DG4_DD	-0.445	0.051	3.077	0.168	4.8	24.657	-1.216	1.071	3.028	11.106	-0.389	25.114
1	37	CC_DG1DC2:DG7DC8_DD	-0.819	-0.075	3.012	-4.607	3.291	31.602	-0.689	0.706	3.074	5.984	8.375	32.092
1	39	CC_DT3DC4:DG5DA6_DD	-0.352	-0.179	3.543	-0.946	-6.792	46.342	0.388	0.357	3.54	-8.575	1.194	46.819
1	42	CC_DT6DT7:DA2DA3_DD	1.155	0.44	3.329	1.798	1.849	37.217	0.437	-1.561	3.396	2.893	-2.813	37.303
1	43	CC_DT7DT8:DA1DA2_DD	-0.077	0.843	2.991	3.49	7.733	26.55	-0.007	0.954	3.074	16.318	-7.364	27.849

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.