A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6M0X  PDB ID: 6M0X 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16BB_A6A7:DT22DT23_CC0.392-1.1643.2273.2723.04526.428-3.278-0.0213.16.599-7.09326.797
17BB_A7G8:DC21DT22_CC-0.474-1.3283.503-2.60811.37735.457-3.6120.3912.97818.0864.14637.27
19BB_A9U10:DA19DT20_CC0.886-1.5093.1720.1653.69327.682-3.955-1.82.9557.676-0.34227.923
112BB_A12A13:DT16DT17_CC-0.37-1.1573.008-1.960.87232.75-2.1850.3462.9941.5443.47132.819
113BB_A13U14:DA15DT16_CC0.613-1.5993.1362.0324.96428.111-4.274-0.8142.85310.104-4.13628.608
116BB_A16G17:DC12DT13_CC0.765-2.3383.6382.7025.42626.855-6.317-0.9093.17311.498-5.72527.518
119BB_A19U20:DA9DT10_CC1.319-2.8022.987-4.019-3.01615.287-7.958-7.4523.034-10.95814.60216.087
129BB_A29C30:A39U42_BB2.688-1.2393.626-23.779.30554.377-1.683-3.8182.1639.61224.55659.654
133BB_A52G53:C63G64_BB3.76-1.3084.05-1.54716.36852.954-2.54-4.1593.43617.8741.68955.271
14BB_C4U5:DA24DG25_CC0.298-1.6053.54-2.0218.58730.98-5.108-0.7552.23131.4653.4236.066
115BB_C15A16:DT13DG14_CC-0.362-2.0213.7940.417.64630.963-5.1940.743.21114.054-0.75431.873
130BB_C30U31:A38A39_BB-0.346-1.0463.752-4.71213.72545.38-2.5270.0073.33817.2755.93147.526
132BB_C32G33:A36G37_BB-3.398-1.5313.029-4.372.27254.626-1.7923.443.212.474.75154.831
136BB_C55U56:A59G61_BB-0.358-1.9643.1834.3414.55513.797-10.6464.4062.20917.801-16.96315.157
11BB_G1U2:DA27DC28_CC1.762-1.1252.883-2.9326.76133.933-2.743-3.3262.46411.4184.95134.701
13BB_G3C4:DG25DC26_CC-0.454-1.1583.512-4.80818.25430.434-4.5220.0482.48931.2818.23835.695
18BB_G8A9:DT20DC21_CC0.418-1.4513.3633.0885.10329.16-3.892-0.173.09610.003-6.05429.751
117BB_G17G18:DC11DC12_CC-0.683-2.373.6291.7571.46723.759-6.2492.2713.423.552-4.25423.867
118BB_G18A19:DT10DC11_CC0.952-0.9953.0742.594-3.14131.456-1.263-1.2823.222-5.763-4.75931.712
121BB_G21U22:A49U50_BB-0.575-1.9843.271-2.9257.02737.315-3.8930.5282.89910.8444.51438.056
127BB_G27U28:A43C44_BB0.442-1.1073.121-0.1997.64931.206-3.257-0.8312.77613.9570.36332.108
134BB_G53G54:C62C63_BB0.622-2.3633.118-0.8013.3722.374-7.119-1.8462.7138.6182.04822.637
135BB_G54C55:G61C62_BB-0.189-2.5133.381-1.102-0.75132.744-4.320.1373.441-1.3311.95432.771
12BB_U2G3:DC26DA27_CC-1.324-1.8473.355.84112.29726.53-5.8233.6351.98924.826-11.79129.763
15BB_U5A6:DT23DA24_CC-0.692-1.3883.212-0.11213.64331.008-4.3681.1742.40824.110.19833.809
110BB_U10U11:DA18DA19_CC0.972-2.0143.0183.631.4528.877-4.297-1.1993.0122.891-7.23829.135
111BB_U11A12:DT17DA18_CC-0.115-1.8683.5461.2116.15233.577-4.1890.3943.15810.534-2.07434.141
114BB_U14C15:DG14DA15_CC-0.652-2.243.337-3.9659.15626.87-6.4460.4882.52118.8968.18228.63
120BB_U20G21:U50DA9_BC3.971-0.8483.623-2.613-0.88465.549-0.743-3.7813.49-0.8162.41365.6
122BB_U22U23:G48A49_BB0.158-1.2163.1752.5638.34144.016-2.3070.0122.91411.0-3.38144.831
123BB_U23U24:A47G48_BB-0.324-2.2783.2810.85816.18422.542-7.8320.8391.35536.022-1.90927.702
124BB_U24U25:A46A47_BB-0.031-0.9533.126-3.5117.2435.313-2.48-0.4092.87111.7475.69736.19
125BB_U25U26:A45A46_BB-0.263-1.2293.0170.6624.99331.491-3.0480.5872.7889.126-1.20931.881
126BB_U26G27:C44A45_BB-0.334-1.5493.14-1.83110.53730.951-4.370.3122.50819.0463.3132.704
128BB_U28A29:U42A43_BB0.653-1.2413.0840.42715.50530.476-4.232-1.0542.22127.382-0.75434.112
131BB_U31C32:G37A38_BB0.364-1.5013.340.7039.37535.278-3.652-0.4882.86715.139-1.13536.471
138CC_DC2DT3:DA6DG7_DD-0.28-0.3773.27-1.461.42134.394-0.8570.2453.2612.4012.46634.452
140CC_DC4DC5:DG4DG5_DD0.5960.3223.3983.587-6.13937.6271.293-0.4413.347-9.415-5.50138.269
141CC_DC5DT6:DA3DG4_DD-0.4450.0513.0770.1684.824.657-1.2161.0713.02811.106-0.38925.114
137CC_DG1DC2:DG7DC8_DD-0.819-0.0753.012-4.6073.29131.602-0.6890.7063.0745.9848.37532.092
139CC_DT3DC4:DG5DA6_DD-0.352-0.1793.543-0.946-6.79246.3420.3880.3573.54-8.5751.19446.819
142CC_DT6DT7:DA2DA3_DD1.1550.443.3291.7981.84937.2170.437-1.5613.3962.893-2.81337.303
143CC_DT7DT8:DA1DA2_DD-0.0770.8432.9913.497.73326.55-0.0070.9543.07416.318-7.36427.849

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.