6M7T: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6M7T PDB ID: 6M7T

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	P_DA7:DT6_T	0.255	0.109	0.03	9.007	-7.59	4.535
1	1	P_DG2:DC11_T	0.262	0.032	-0.141	-8.133	-11.739	5.914
1	3	P_DG4:DC9_T	-0.264	-0.104	-0.367	-11.647	-0.513	3.634
1	5	P_DG6:DC7_T	-0.184	-0.324	-0.506	2.554	1.495	-0.054
1	7	P_DG8:DC5_T	0.412	-0.244	0.231	9.413	-18.088	1.754
1	2	P_DT3:DA10_T	-0.782	0.005	0.034	-8.037	-15.597	4.179
1	4	P_DT5:DA8_T	-0.207	-0.301	-0.287	-1.438	0.968	0.603

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.