A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 6N61  PDB ID: 6N61 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12N_DA2:DG22_T-1.1841.093-1.83519.4096.177-42.04
112N_DA13:DT12_T-1.887-0.3930.471-1.931-13.005-10.566
116N_DA18:DT7_T1.7660.339-0.025-9.479-9.201-5.71
117N_DA19:DT6_T1.1390.6010.583-9.03-7.8974.81
13N_DC4:DG21_T0.008-0.5861.6085.266-7.016-16.651
16N_DC7:DG18_T0.6470.1980.863-4.07-0.085-8.252
17N_DC8:DG17_T1.1980.0990.8082.9753.2153.992
18N_DC9:DG16_T1.809-0.7031.3363.2690.553-4.845
19N_DC10:DG15_T-0.9610.5030.89410.1482.7373.687
11N_DG1:DT23_T-1.573-0.315-1.81319.51617.066-58.955
111N_DG12:DC13_T0.4520.828-0.01321.155-4.65612.903
113N_DG15:DC10_T-0.2160.573-0.361-13.996-30.234.585
114N_DG16:DC9_T-1.768-0.186-0.178-16.65-27.151-1.437
115N_DG17:DC8_T-0.213-0.117-0.068-7.678-11.4360.678
118N_DG20:DC5_T-0.177-0.4091.2080.024-0.7080.174
14N_DT5:DA20_T-0.264-0.3651.161-1.966-10.412-6.605
15N_DT6:DA19_T-2.031-0.1591.209-1.797-6.561-4.78
110N_DT11:DA14_T-1.6850.915-0.16616.51.734-13.142
119N_DT22:DA3_T-0.06-0.1190.1953.4341.9891.055
120N_DT23:DA2_T-1.9430.122-0.32615.3044.2037.411
121N_DT24:DA1_T-0.249-0.173-1.20215.965-0.703-5.636

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.