A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6N9F  PDB ID: 6N9F 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
18161A_4OC1942:G1932_1A119
18261A_5MC1964:U1962_1A00
111A_A6:U2906_1A120
131A_A8:U2904_1A120
1111A_A21:U544_1A120
1171A_A28:G537_1A911
1271A_A38:U467_1A120
1321A_A43:U461_1A120
1661A_A48:U118_1A323
1531A_A63:U89_1A00
1771A_A77:U106_1A120
1831A_A83:G100_1A1011
1651A_A116:G50_1A911
1641A_A117:A51_1A00
1421A_A179:U195_1A424
1431A_A180:A193_1A82
1471A_A184:G239_1A110
1981A_A188:U2443_1A00
1991A_A205:U458_1A424
11181A_A210:U454_1A424
11001A_A211:G221_1A911
11021A_A214:U219_1A120
11031A_A240:G236_1A00
11071A_A244:U232_1A424
11081A_A245:A230_1A82
11091A_A246:G229_1A611
11141A_A251:U224_1A120
11231A_A259:U285_1A424
11691A_A306:U382_1A424
11751A_A313:G375_1A1011
11801A_A318:G368_1A00
11851A_A346:U363_1A50
12011A_A348:G362_1A1011
11341A_A388:U296_1A120
12291A_A401:G427_1A1011
12301A_A428:U400_1A424
12311A_A429:A450_1A00
11521A_A439:A2423_1A100
11491A_A442:U2420_1A120
11161A_A456:A222_1A21
1231A_A480:G472_1A610
12321A_A483:A497_1A82
12341A_A486:G495_1A1011
12381A_A517:G514_1A00
12431A_A522:A508_1A50
11971A_A526:A503_1A72
11991A_A528:A505_1A21
11981A_A530:A506_1A21
12451A_A554:U2063_1A00
12561A_A561:U580_1A120
12651A_A598:U589_1A120
12681A_A601:G586_1A18
12931A_A613:U714_1A120
13051A_A626:G650_1A60
13101A_A632:G644_1A1011
13251A_A722:U850_1A424
13261A_A723:A849_1A45
13271A_A724:A847_1A00
13361A_A736:U820_1A120
13491A_A769:U756_1A120
13541A_A774:G751_1A911
13601A_A782:A808_1A100
13701A_A799:U2621_1A120
13771A_A824:U834_1A120
13951A_A867:A1018_1A82
13961A_A868:G1017_1A1011
14111A_A882:U869_1A120
14171A_A888:U982_1A120
14341A_A908:G962_1A911
14361A_A910:U959_1A120
14401A_A917:U953_1A120
14421A_A919:U951_1A120
14041A_A998:C1009_1A10
14941A_A1074:A1172_1A82
14951A_A1075:G1171_1A1011
14981A_A1078:G1168_1A18
15101A_A1094:G1156_1A00
15111A_A1096:C1155_1A00
15241A_A1100:U1151_1A120
15121A_A1119:U1111_1A50
15151A_A1123:G1108_1A00
15161A_A1134:U1106_1A00
14641A_A1188:U1065_1A221
14691A_A1194:U1060_1A120
14761A_A1201:U1045_1A424
13811A_A1234:G865_1A100
13861A_A1239:U860_1A120
15321A_A1249:A1287_1A00
12061A_A1255:A355_1A100
12081A_A1258:G1282_1A00
12091A_A1259:G1281_1A1011
12741A_A1300:G608_1A1011
12811A_A1308:U2039_1A120
15361A_A1314:G2034_1A1011
15371A_A1315:U2033_1A120
15441A_A1332:U1328_1A424
15641A_A1347:G1672_1A60
15761A_A1363:U1381_1A120
15811A_A1388:U1648_1A424
15891A_A1400:G1423_1A1011
15941A_A1405:U1418_1A221
15951A_A1406:G1417_1A1011
16001A_A1441:U1436_1A424
16151A_A1458:U1636_1A120
16221A_A1465:U1625_1A424
16291A_A1473:A1618_1A82
16961A_A1532:U1549_1A120
16871A_A1574:A1589_1A82
16881A_A1575:G1588_1A1011
16441A_A1600:U1484_1A424
17021A_A1601:A1681_1A45
16481A_A1605:A1480_1A21
16511A_A1609:U1477_1A120
17031A_A1654:U1667_1A424
17061A_A1702:A2027_1A100
17151A_A1711:C2018_1A226
17161A_A1712:U2017_1A120
17181A_A1716:U2015_1A120
17361A_A1736:A1745_1A82
17371A_A1737:G1744_1A1011
17401A_A1770:G1766_1A1011
17501A_A1780:U1756_1A120
15611A_A1793:A1679_1A00
17811A_A1804:A1999_1A60
17651A_A1814:G2619_1A110
17551A_A1822:G1859_1A1011
17761A_A1834:G1845_1A611
17821A_A1860:U1740_1A120
18021A_A1885:G1910_1A1011
18071A_A1890:G1905_1A611
18151A_A1941:PSU1933_1A00
18231A_A1954:G1990_1A1011
12701A_A2041:G2057_1A18
12711A_A2042:U2056_1A120
12641A_A2052:U591_1A00
12511A_A2055:U585_1A120
18531A_A2079:U2623_1A120
19141A_A2136:A2141_1A45
19161A_A2139:U2194_1A120
19121A_A2156:G2179_1A1011
18901A_A2221:G2236_1A1011
18551A_A2239:U2114_1A00
18681A_A2253:U2101_1A120
19221A_A2259:U2269_1A120
19371A_A2279:U2284_1A221
14321A_A2280:A964_1A82
19271A_A2285:A2278_1A00
19281A_A2286:U2277_1A00
19311A_A2290:U2274_1A120
19421A_A2299:U2356_1A221
19511A_A2310:G2330_1A911
19591A_A2334:A2347_1A21
19691A_A2378:G2363_1A911
19721A_A2381:U2360_1A120
11631A_A2405:A2434_1A45
18711A_A2447:U2096_1A120
19891A_A2462:C2085_1A10
19901A_A2463:G2083_1A18
19921A_A2465:U2512_1A120
19981A_A2471:U2505_1A120
110071A_A2481:G2493_1A911
18401A_A2578:U2574_1A424
17641A_A2599:G2620_1A1011
17671A_A2601:PSU2617_1A10
17681A_A2602:U2616_1A120
18471A_A2633:U2069_1A120
110341A_A2674:A2543_1A21
110371A_A2677:U2668_1A424
110411A_A2682:U2662_1A120
110421A_A2683:U2661_1A120
110461A_A2687:G2745_1A18
110501A_A2691:U2741_1A120
16571A_A2717:U2714_1A00
16631A_A2723:U2708_1A120
110721A_A2747:G2783_1A1011
110761A_A2751:G2779_1A18
110781A_A2754:G2776_1A60
110851A_A2761:U2767_1A00
110861A_A2762:A2766_1A45
110871A_A2763:C2765_1A50
110271A_A2778:A2553_1A50
110611A_A2788:A2651_1A60
110631A_A2789:U2649_1A424
110621A_A2791:G2650_1A911
110941A_A2820:G2900_1A100
110971A_A2823:U2897_1A120
111041A_A2831:A2836_1A50
111181A_A2861:U2876_1A00
181A_C18:G547_1A119
191A_C19:G546_1A119
1101A_C20:G545_1A119
1121A_C22:G543_1A119
1201A_C31:G500_1A119
1211A_C32:G499_1A119
1261A_C37:G468_1A119
1281A_C39:G466_1A119
1291A_C40:G465_1A119
1301A_C41:G464_1A119
1491A_C45:G168_1A119
1501A_C46:G167_1A119
1521A_C61:G91_1A119
1541A_C64:G88_1A119
1551A_C65:G87_1A119
1581A_C68:G57_1A119
1751A_C75:G108_1A119
1761A_C76:G107_1A119
1851A_C85:G95_1A119
1861A_C86:G94_1A119
1611A_C113:G54_1A119
1621A_C114:G53_1A119
1871A_C126:G121_1A10
1881A_C127:G120_1A119
1891A_C128:G119_1A119
1921A_C131:G146_1A119
1931A_C132:G145_1A119
1961A_C135:G142_1A119
1691A_C151:G164_1A119
1711A_C153:G162_1A119
1731A_C155:G160_1A119
1351A_C172:G203_1A119
1361A_C173:G201_1A119
1441A_C181:C192_1A100
11051A_C242:G234_1A119
11201A_C256:G452_1A119
11211A_C257:G451_1A119
11241A_C262:G282_1A119
11251A_C263:G281_1A119
11281A_C266:G278_1A119
11291A_C267:G277_1A119
11321A_C270:G273_1A10
11661A_C303:G385_1A119
11671A_C304:G384_1A119
11711A_C309:G380_1A119
11721A_C310:G379_1A119
11731A_C311:G378_1A119
11741A_C312:G377_1A119
11771A_C315:G373_1A119
11781A_C316:G372_1A119
11821A_C320:G366_1A10
11831A_C321:G365_1A119
11901A_C326:G339_1A119
11881A_C358:G341_1A119
11391A_C394:G291_1A119
11401A_C395:G290_1A119
11411A_C396:G289_1A119
12281A_C402:G426_1A119
12271A_C403:G425_1A119
12261A_C404:G424_1A119
12251A_C405:G423_1A119
12191A_C412:G438_1A119
11511A_C440:G2422_1A119
11501A_C441:G2421_1A119
11481A_C443:G2419_1A119
11471A_C444:G437_1A10
11451A_C446:G435_1A119
11441A_C447:G434_1A119
12351A_C487:G494_1A119
12361A_C488:G493_1A119
12001A_C534:G507_1A119
12551A_C560:G581_1A119
12571A_C562:G579_1A119
12601A_C565:G576_1A119
12611A_C566:G575_1A119
12621A_C567:G574_1A119
12631A_C568:G573_1A119
12861A_C610:U857_1A00
12921A_C612:G715_1A119
12941A_C614:G713_1A119
12981A_C618:G709_1A119
13041A_C624:G703_1A119
13071A_C628:G648_1A119
13121A_C634:G642_1A119
13131A_C635:G641_1A119
13191A_C665:G673_1A119
13201A_C666:G672_1A119
13221A_C692:G698_1A119
12871A_C718:G856_1A119
12881A_C719:G855_1A119
12891A_C720:U854_1A00
13281A_C725:G846_1A119
13291A_C726:G845_1A119
13331A_C730:G841_1A119
13351A_C734:A1811_1A50
13381A_C738:G818_1A119
13391A_C739:G817_1A119
13401A_C740:G816_1A119
13441A_C744:G812_1A119
13451A_C745:G810_1A119
13461A_C766:G759_1A119
13471A_C767:G758_1A119
13481A_C768:G757_1A119
13561A_C777:G749_1A119
13571A_C778:G748_1A119
13581A_C779:G747_1A119
13611A_C783:G807_1A119
13621A_C784:G806_1A119
14101A_C881:G870_1A119
14131A_C884:G987_1A119
14141A_C885:G985_1A119
14161A_C887:G983_1A119
14201A_C891:G979_1A119
14221A_C893:G976_1A119
14231A_C897:G973_1A119
14291A_C903:G967_1A119
14301A_C904:G966_1A119
14461A_C923:A947_1A10
14521A_C931:G938_1A119
14531A_C932:A937_1A00
14001A_C994:G1013_1A119
14021A_C996:G1011_1A119
14061A_C1000:G1007_1A119
14561A_C1022:G1033_1A119
14601A_C1051:G1183_1A119
14611A_C1052:G1182_1A119
14621A_C1053:G1181_1A119
15031A_C1084:G1163_1A119
15051A_C1086:G1161_1A00
15061A_C1087:G1160_1A119
15081A_C1089:G1158_1A119
15221A_C1098:G1153_1A119
15231A_C1099:G1152_1A119
15141A_C1121:G1109_1A119
15171A_C1125:G1105_1A119
15181A_C1126:G1104_1A119
15301A_C1138:G1145_1A119
14661A_C1191:G1063_1A119
14671A_C1192:G1062_1A119
14681A_C1193:G1061_1A119
14711A_C1196:G1057_1A119
14731A_C1198:G1049_1A119
14741A_C1199:G1048_1A119
14781A_C1204:G1043_1A119
14811A_C1207:G1039_1A119
14861A_C1212:G1228_1A119
13881A_C1241:G1296_1A119
13921A_C1245:G1291_1A119
13931A_C1246:G1290_1A119
13941A_C1247:G1289_1A119
15341A_C1252:G1285_1A119
15351A_C1253:G1284_1A119
12121A_C1262:G1278_1A119
12131A_C1263:G1277_1A119
12151A_C1266:G1275_1A119
12161A_C1267:G1274_1A119
12171A_C1268:G1273_1A119
12731A_C1297:A609_1A425
12761A_C1303:G606_1A119
12771A_C1304:G605_1A119
12801A_C1307:G602_1A119
15381A_C1316:G2032_1A119
15451A_C1335:G1327_1A119
15461A_C1336:G1326_1A119
15471A_C1337:G1325_1A119
15491A_C1339:G1323_1A119
15511A_C1341:G1692_1A119
15531A_C1343:G1690_1A119
15541A_C1344:G1689_1A119
15661A_C1350:G1670_1A119
15671A_C1351:G1669_1A119
15681A_C1352:G1668_1A119
15731A_C1360:G1384_1A119
15741A_C1361:G1383_1A119
15771A_C1364:G1380_1A119
15821A_C1391:G1647_1A119
15861A_C1396:G1427_1A119
15871A_C1397:G1426_1A119
15971A_C1408:G1415_1A119
15981A_C1409:G1414_1A119
16011A_C1444:G1435_1A119
16021A_C1445:G1434_1A119
16051A_C1448:G1431_1A119
16061A_C1449:G1390_1A119
16071A_C1450:G1389_1A119
16101A_C1453:G1641_1A119
16111A_C1454:G1640_1A119
16121A_C1455:G1639_1A119
16141A_C1457:G1637_1A119
16201A_C1463:G1628_1A119
16301A_C1474:A1617_1A00
16331A_C1509:G1497_1A119
16341A_C1510:G1495_1A119
16351A_C1511:G1494_1A119
16721A_C1559:G1527_1A119
16741A_C1561:G1525_1A119
16771A_C1564:G1522_1A119
16901A_C1577:G1586_1A119
16911A_C1578:G1585_1A119
16921A_C1579:G1584_1A119
16381A_C1594:G1490_1A119
16391A_C1595:G1489_1A119
16401A_C1596:G1488_1A119
16411A_C1597:G1487_1A119
16421A_C1598:G1486_1A119
16461A_C1603:G1482_1A119
16471A_C1604:G1481_1A119
16531A_C1611:G1475_1A119
16541A_C1612:G1615_1A119
17041A_C1657:G1666_1A119
17051A_C1658:G1665_1A119
15601A_C1677:G1682_1A119
15391A_C1695:G2031_1A119
17071A_C1703:G2026_1A119
17081A_C1704:G2025_1A119
17091A_C1705:G2024_1A119
17111A_C1707:G2022_1A10
17131A_C1709:G2020_1A119
17141A_C1710:G2019_1A119
17311A_C1730:G1752_1A119
17321A_C1731:G1751_1A119
17331A_C1732:G1750_1A119
17341A_C1733:G1749_1A119
17381A_C1738:G1743_1A119
17421A_C1772:G1764_1A119
17431A_C1773:G1763_1A119
17441A_C1774:G1762_1A119
17451A_C1775:G1761_1A119
17521A_C1782:G1754_1A119
17531A_C1783:G1787_1A119
17221A_C1796:G2009_1A119
17241A_C1798:G2007_1A119
17281A_C1802:G2002_1A119
17541A_C1821:C1805_1A40
17571A_C1824:G1857_1A119
17591A_C1826:G1855_1A119
17611A_C1828:G1853_1A119
17751A_C1831:G1848_1A222
17771A_C1835:G1844_1A119
17791A_C1837:G1842_1A119
17831A_C1861:G1997_1A119
17851A_C1863:G1995_1A119
17891A_C1867:G1926_1A119
17901A_C1868:G1925_1A119
17941A_C1874:G1919_1A119
17951A_C1875:G1918_1A119
18011A_C1883:A1912_1A00
18201A_C1946:G1928_1A119
18211A_C1947:G1951_1A222
18251A_C1956:G1986_1A119
18301A_C1969:G1981_1A119
12481A_C2047:G2060_1A119
12491A_C2048:G2059_1A119
19931A_C2077:C2511_1A00
19031A_C2133:G2169_1A00
19191A_C2150:G2182_1A119
19201A_C2151:G2181_1A119
19111A_C2158:G2177_1A119
19101A_C2159:G2176_1A119
19091A_C2160:G2175_1A119
19081A_C2161:G2174_1A119
19071A_C2162:G2173_1A119
19051A_C2164:G2171_1A119
19041A_C2165:G2170_1A119
18751A_C2205:G2128_1A119
18771A_C2207:G2126_1A119
18801A_C2210:G2123_1A119
18871A_C2217:G2116_1A119
18881A_C2218:G2115_1A119
18911A_C2222:G2235_1A119
18921A_C2223:G2234_1A119
18931A_C2224:G2233_1A119
18951A_C2226:G2231_1A119
18571A_C2241:G2112_1A119
18591A_C2243:G2110_1A119
18641A_C2248:G2105_1A119
18671A_C2252:G2102_1A119
19231A_C2260:G2268_1A119
19241A_C2287:G2267_1A119
19341A_C2293:G2271_1A119
19461A_C2304:G2352_1A119
19471A_C2305:G2351_1A119
19481A_C2306:G2350_1A119
19491A_C2307:G2349_1A119
19501A_C2309:G2333_1A119
19541A_C2313:G2327_1A119
19611A_C2336:G2343_1A119
19411A_C2338:G2401_1A119
19791A_C2371:G2440_1A119
19661A_C2375:G2366_1A119
19671A_C2376:G2365_1A119
19711A_C2380:G2361_1A119
19771A_C2386:G2391_1A119
19621A_C2397:G2342_1A119
19631A_C2398:G2341_1A119
11621A_C2407:G2433_1A10
11551A_C2415:G2426_1A119
11541A_C2416:G2425_1A119
11641A_C2436:A2404_1A425
19831A_C2453:G2092_1A119
19841A_C2454:G2091_1A119
19851A_C2455:G2089_1A119
19911A_C2464:U2516_1A118
19961A_C2468:G2507_1A119
110001A_C2473:G2501_1A119
110021A_C2475:G2499_1A119
110031A_C2476:G2498_1A119
110041A_C2477:G2497_1A119
110051A_C2478:G2496_1A119
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134572a_G1504:C1399_2a119
134582a_G1505:A1502_2a30
134952a_G1508:C1527_2a119
134982a_G1511:C1524_2a119
135032a_G1516:MA61519_2a00
133162a_M2G966:5MC1400_2a00
131452a_PSU516:A533_2a423
129322a_U12:G22_2a128
129552a_U49:U365_2a40
129662a_U62:G105_2a128
129982a_U114:A313_2a120
130142a_U125:G236_2a128
130182a_U129:G232_2a128
130212a_U133:U229_2a116
130452a_U164:G157_2a128
130512a_U170:A151_2a424
130602a_U180:A195_2a424
130262a_U189K:G189_2a128
130292a_U192:A185_2a120
130632a_U249:G275_2a128
130642a_U252:A274_2a120
130652a_U253:A273_2a120
130682a_U256:A270_2a120
130742a_U294:A303_2a120
130762a_U296:G301_2a128
129922a_U340:A349_2a120
129582a_U358:A53_2a120
129572a_U359:G52_2a128
131052a_U387:G376_2a128
131202a_U404:U498_2a30
131212a_U405:A499_2a323
131262a_U420:G423_2a60
130982a_U429:A431_2a323
130822a_U486:A448_2a424
130902a_U494:A439_2a424
131412a_U512:A539_2a120
129222a_U551:A33_2a120
129232a_U552:A32_2a120
131672a_U571:A865_2a120
131782a_U636:A602_2a120
131862a_U646:G593_2a128
131982a_U659:A746_2a120
132072a_U669:A737_2a120
132102a_U672:G734_2a128
132152a_U677:G713_2a10
132162a_U678:A712_2a120
132292a_U686:A704_2a424
132502a_U772:A807_2a120
132622a_U788:A794_2a00
131652a_U820:A873_2a00
131642a_U827:A872_2a221
132662a_U850:G836_2a128
132832a_U891:A907_2a424
129392a_U920:G15_2a128
129402a_U921:A1396_2a120
133002a_U960:U956_2a213
133132a_U961:A1201_2a221
133392a_U991:A1213_2a424
133582a_U997:A1044_2a120
133612a_U1000:A1041_2a120
133712a_U1012:G1017_2a128
133722a_U1025:G1036_2a128
133782a_U1070:A1105_2a120
133812a_U1073:A1102_2a120
133862a_U1086:G1099_2a10
133902a_U1090:U1095_2a116
133992a_U1121:A1152_2a120
134002a_U1122:A1151_2a120
134092a_U1135:G1138_2a60
133542a_U1194:U1062_2a116
133502a_U1199:G1058_2a128
133472a_U1205:A1055_2a00
133072a_U1232:A949_2a120
133102a_U1235:A946_2a120
134262a_U1247:G1290_2a128
133262a_U1330:U1307_2a116
132932a_U1341:G942_2a128
132982a_U1345:U1376_2a213
134392a_U1348:A1374_2a424
134422a_U1351:G1371_2a128
134492a_U1358:A1363A_2a221
134642a_U1414:G1486_2a128
134752a_U1425:G1475_2a128
134772a_U1427:A1473_2a120
134852a_U1436:C1465_2a00
134512a_U1495:U1406_2a00
134972a_U1510:G1525_2a128
134992a_U1512:G1523_2a128

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)