A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6OD3  PDB ID: 6OD3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11X_DA2:DT13_W-0.319-0.2530.0473.405-14.1444.037
13X_DA4:DT11_W0.221-0.1250.4163.733-11.705-0.782
15X_DA6:DT9_W-0.201-0.238-0.005-2.213-11.7692.993
111X_DA12:DT3_W0.149-0.0360.251-2.69-15.7766.868
14X_DC5:DG10_W0.403-0.179-0.0176.078-5.371-1.145
16X_DC7:DG8_W-0.007-0.1060.332-4.716-9.247-0.401
17X_DG8:DC7_W-0.048-0.1630.2587.859-13.439-0.695
19X_DG10:DC5_W-0.351-0.136-0.009-7.743-7.633-0.705
12X_DT3:DA12_W-0.176-0.1060.1011.341-18.0112.85
18X_DT9:DA6_W0.119-0.1960.0286.463-12.402-0.69
110X_DT11:DA4_W-0.123-0.2130.389-9.169-10.78-2.273
112X_DT13:DA2_W0.192-0.2820.165-5.847-13.4172.798
113Y_DA2:DT13_Z-0.154-0.1960.1543.883-11.4282.412
115Y_DA4:DT11_Z0.06-0.1150.37511.912-7.3760.226
117Y_DA6:DT9_Z-0.311-0.120.059-5.656-9.963-0.127
123Y_DA12:DT3_Z-0.115-0.1110.087-2.861-17.3036.287
116Y_DC5:DG10_Z0.269-0.164-0.10111.37-3.012-1.284
118Y_DC7:DG8_Z0.03-0.110.208-5.382-14.683-1.5
119Y_DG8:DC7_Z-0.033-0.1150.192.189-13.525-1.064
121Y_DG10:DC5_Z-0.354-0.1210.015-9.841-7.977-1.993
114Y_DT3:DA12_Z0.137-0.0450.1463.6-9.451.961
120Y_DT9:DA6_Z0.29-0.0610.0712.772-14.703-1.863
122Y_DT11:DA4_Z-0.263-0.0680.321-11.325-13.233-2.439
124Y_DT13:DA2_Z0.143-0.2380.06-4.601-14.2574.518

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.