A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 6OD3  PDB ID: 6OD3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11XX_DA2DT3:DA12DT13_WW-0.07-0.673.28-0.185-0.07234.908-1.1050.0893.282-0.120.30834.909
13XX_DA4DC5:DG10DT11_WW0.408-0.6673.2592.8930.4832.193-1.284-0.2213.2720.863-5.20432.322
15XX_DA6DC7:DG8DT9_WW-1.037-0.1263.352-5.8915.74435.251-1.0510.8013.4149.3299.56836.169
111XX_DA12DT13:DA2DT3_WW-0.321-0.7263.330.4981.95432.753-1.6240.6553.2773.461-0.88332.813
14XX_DC5DA6:DT9DG10_WW0.5320.5643.4774.2983.07540.570.444-0.2543.5444.412-6.16740.899
16XX_DC7DG8:DC7DG8_WW0.0471.113.2890.31510.10931.960.162-0.0263.47117.81-0.55433.482
17XX_DG8DT9:DA6DC7_WW0.76-0.3433.3264.5441.56333.337-0.854-0.5493.3782.707-7.8733.672
19XX_DG10DT11:DA4DC5_WW-0.372-0.8053.332-2.595-1.47634.863-1.1110.2173.38-2.4584.32234.986
12XX_DT3DA4:DT11DA12_WW0.008-0.1553.176-1.1469.45734.374-1.581-0.1733.02715.6331.89435.631
18XX_DT9DG10:DC5DA6_WW0.070.3533.647-1.2630.22141.4350.472-0.2493.6450.3121.78441.454
110XX_DT11DA12:DT3DA4_WW0.457-0.0733.0890.3378.30333.264-1.356-0.7252.98914.23-0.57834.258
112YY_DA2DT3:DA12DT13_ZZ0.213-0.7573.2770.6091.89333.203-1.638-0.2713.2333.31-1.06433.261
114YY_DA4DC5:DG10DT11_ZZ0.263-0.9483.3981.902-3.02933.833-1.111-0.133.476-5.186-3.25734.016
116YY_DA6DC7:DG8DT9_ZZ-0.893-0.2343.235-4.002-0.25935.113-0.3470.8773.315-0.4276.60635.334
122YY_DA12DT13:DA2DT3_ZZ-0.211-0.7623.2240.1052.43133.126-1.730.3873.1614.257-0.18333.212
115YY_DC5DA6:DT9DG10_ZZ-0.103-0.1223.6880.203-1.2640.512-0.0170.1753.689-1.819-0.29440.531
117YY_DC7DG8:DC7DG8_ZZ-0.1471.0523.387-0.58311.72532.217-0.2340.1493.54620.3071.00934.236
118YY_DG8DT9:DA6DC7_ZZ0.591-0.0933.2434.2480.77234.517-0.274-0.343.2881.295-7.12434.778
120YY_DG10DT11:DA4DC5_ZZ-0.482-0.6723.299-1.319-1.13133.822-0.9690.6113.335-1.9422.26633.865
113YY_DT3DA4:DT11DA12_ZZ0.4390.0713.0641.8773.5334.567-0.389-0.4643.0755.916-3.14634.79
119YY_DT9DG10:DC5DA6_ZZ-0.0080.7013.604-2.075-1.36341.2981.152-0.2333.576-1.9312.93941.369
121YY_DT11DA12:DT3DA4_ZZ1.0030.7533.161.5815.89537.7950.416-1.3343.2749.028-2.42138.267

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.