A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6OD4  PDB ID: 6OD4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12X_DA3:DT10_W0.23-0.1850.365.385-6.523-1.063
14X_DA5:DT8_W-0.154-0.191-0.003-3.425-11.8111.689
13X_DC4:DG9_W0.431-0.220.1577.575-6.889-0.346
15X_DC6:DG7_W-0.023-0.1680.177-2.605-16.915-0.144
16X_DG7:DC6_W0.007-0.1740.1756.038-15.5711.505
18X_DG9:DC4_W-0.477-0.2030.071-5.108-5.598-0.034
11X_DT2:DA11_W-0.042-0.62-0.12117.714-18.106-4.296
17X_DT8:DA5_W0.171-0.168-0.0365.779-12.4822.24
19X_DT10:DA3_W-0.06-0.1740.289-5.131-6.362-0.239

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.