A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6OD4  PDB ID: 6OD4 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12XX_DA3DC4:DG9DT10_WW0.34-0.993.287-0.7841.65932.905-2.027-0.7323.2262.9271.38332.955
14XX_DA5DC6:DG7DT8_WW-0.654-0.213.225-3.7372.23433.039-0.7370.5223.2573.9076.53533.316
13XX_DC4DA5:DT8DG9_WW0.1610.2663.7323.155-2.75140.9040.7190.163.709-3.924-4.541.109
15XX_DC6DG7:DC6DG7_WW0.0570.953.4220.62811.63734.003-0.2840.0063.54819.211-1.03735.889
16XX_DG7DT8:DA5DC6_WW0.589-0.1893.2754.1862.05232.778-0.681-0.3213.3053.613-7.37233.099
18XX_DG9DT10:DA3DC4_WW-0.273-0.9493.3580.4481.51534.128-1.860.5363.312.58-0.76234.163
11XX_DT2DA3:DT10DA11_WW1.5751.893.9644.503-3.32238.1293.365-1.713.945-5.052-6.84738.522
17XX_DT8DG9:DC4DA5_WW-0.1580.2863.717-3.124-1.26140.1470.577-0.1733.708-1.8344.54140.282

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.