A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6OD5  PDB ID: 6OD5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12X_1CC2:DG11_Y0.343-0.0750.0973.081-27.5971.395
110X_1CC10:DG3_Y0.355-0.0550.678-7.611-14.367-1.126
11X_DA1:DT12_Y-0.086-0.2150.2747.234-20.18-0.134
15X_DA5:DT8_Y-0.086-0.20.26814.239-20.2572.712
14X_DC4:DG9_Y0.445-0.0490.472-6.841-10.7610.829
16X_DC6:DG7_Y-0.015-0.142-0.093-0.44-20.625-0.332
13X_DG3:1CC10_Y-0.3620.0540.262-8.178-14.1536.036
17X_DG7:DC6_Y0.136-0.1720.4231.334-18.768-2.858
19X_DG9:DC4_Y-0.593-0.1710.464-1.672-6.291-0.379
111X_DG11:1CC2_Y0.0050.0290.5455.211-19.5495.275
18X_DT8:DA5_Y-0.295-0.0140.797-13.192-21.394-0.028
112X_DT12:DA1_Y-1.234-0.2980.353-3.444-25.24-8.12
113E_1CC2:DG11_F0.0750.0440.067-1.196-14.5517.502
121E_1CC10:DG3_F0.736-0.030.1846.945-10.5056.598
116E_DA5:DT8_F0.214-0.0320.85513.756-22.035-0.14
115E_DC4:DG9_F0.58-0.1140.5492.374-6.1832.196
117E_DC6:DG7_F-0.058-0.1390.197-1.206-21.885-1.72
114E_DG3:1CC10_F-0.2560.0120.7258.497-14.8660.238
118E_DG7:DC6_F0.13-0.288-0.084-0.493-21.819-2.465
120E_DG9:DC4_F-0.405-0.0690.5587.399-10.1312.84
122E_DG11:1CC2_F-0.223-0.0540.1121.154-26.0451.187
119E_DT8:DA5_F0.083-0.1220.08-14.919-19.4273.523
123E_DT12:DA1_F0.169-0.1980.152-12.085-15.4084.272

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.