A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6OD5  PDB ID: 6OD5 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12XX_1CC2DG3:1CC10DG11_YY1.210.2733.4882.0512.60929.588-1.983-1.7823.39523.366-3.832.171
110XX_1CC10DG11:1CC2DG3_YY0.173-0.0262.921-0.6218.75231.141-1.43-0.4092.80715.9111.12932.324
11XX_DA11CC2:DG11DT12_YY-0.151-0.6253.3542.556-2.57338.267-0.6190.5573.371-3.914-3.88838.433
15XX_DA5DC6:DG7DT8_YY-0.803-0.5323.573-2.0174.50434.496-1.6351.0073.5187.5473.3834.837
14XX_DC4DA5:DT8DG9_YY-0.1870.953.1392.2310.51932.7551.5940.6983.1340.92-3.9532.833
16XX_DC6DG7:DC6DG7_YY-0.250.7543.488-2.88610.25534.904-0.364-0.0423.5716.6244.67836.445
13XX_DG3DC4:DG91CC10_YY-0.136-0.4523.238-2.832.96833.205-1.268-0.2253.1875.1684.92933.45
17XX_DG7DT8:DA5DC6_YY0.917-0.4873.511.506-0.13734.873-0.79-1.2823.547-0.229-2.51134.905
19XX_DG91CC10:DG3DC4_YY-0.239-0.8693.424-0.903-0.08836.579-1.3710.253.43-0.141.43936.59
111XX_DG11DT12:DA11CC2_YY-0.919-0.6233.33-1.702-4.46523.0360.0431.6553.445-11.0284.20523.52
18XX_DT8DG9:DC4DA5_YY0.4341.023.3454.053-11.43737.7132.834-0.1722.954-17.158-6.08139.549
112XE_DT121CC2:DG11DA1_FY0.877-2.0573.1477.81711.04635.016-4.507-0.4422.53817.569-12.43337.463
113EE_1CC2DG3:1CC10DG11_FF-0.250.1353.067-4.1086.93329.733-1.031-0.2913.02713.2087.82630.782
121EE_1CC10DG11:1CC2DG3_FF-1.2540.3943.36-2.20213.08529.274-1.8041.8453.31424.3744.10332.081
116EE_DA5DC6:DG7DT8_FF-0.813-0.4173.5681.153-0.18434.968-0.6631.5413.542-0.306-1.91934.987
115EE_DC4DA5:DT8DG9_FF-0.571.0263.337-4.23-12.41837.9552.8950.3562.919-18.4336.27940.079
117EE_DC6DG7:DC6DG7_FF0.1220.8163.5890.66711.27735.145-0.45-0.093.67118.106-1.07136.861
114EE_DG3DC4:DG91CC10_FF0.306-0.8043.4030.3720.82236.144-1.416-0.4393.3871.324-0.59936.154
118EE_DG7DT8:DA5DC6_FF0.96-0.5283.5113.464.77234.342-1.664-1.0363.4868.008-5.80734.829
120EE_DG91CC10:DG3DC4_FF0.058-0.4193.3143.5492.58335.005-1.0780.4353.2654.274-5.87235.27
122EE_DG11DT12:DA11CC2_FF0.307-0.4613.639-0.175-7.16738.9580.264-0.4763.662-10.6370.25939.587
119EE_DT8DG9:DC4DA5_FF0.2530.923.104-3.9371.15632.2591.451-1.1063.0822.077.04932.512

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.