A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jan-2020 number of released structures: 10593
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NDB ID: 6OL3  PDB ID: 6OL3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13CC_A28C29:G134U135_CC0.547-1.6563.0882.1976.10630.649-4.107-0.6392.74711.392-4.09831.312
133CC_A41U40:A119U92_CC-0.8381.91-3.746-6.261-12.018-37.09-4.37-0.442-3.118.166-9.464-39.406
130CC_A44C43:G90U89_CC-0.1361.442-3.3310.76-14.357-28.505-5.033-0.376-2.34827.0881.433-31.858
123CC_A51G50:C83U82_CC0.131.739-2.765.492-7.369-30.013-4.308-0.573-2.26713.82710.306-31.357
120CC_A54G53:C80C79_CC-0.3291.611-2.7168.148-9.27-26.24-4.734-1.987-1.86919.1316.814-28.951
110CC_A66G64:C70C68_CC-4.8194.98-2.32687.26141.183-135.369-2.066-2.676-2.796-71.03443.904-174.685
139CC_A95U96:G112U113_CC0.04-1.3293.1041.336.11244.284-2.2630.0592.9058.06-1.75444.702
145CC_A103C104:G125U126_CC-0.533-1.9853.062-5.8995.07335.953-3.7760.1152.8158.1039.42136.758
14CC_C29C30:G133G134_CC-0.938-2.2383.323-5.5086.93830.174-5.390.7342.87312.98110.30531.418
15CC_C30U31:A132G133_CC0.338-1.3523.2243.04211.74335.243-3.567-0.1552.67318.724-4.8537.21
17CC_C32G33:C130G131_CC-0.218-1.463.3051.499.25330.404-4.2690.6552.7417.139-2.7631.783
19CC_C34A35:U128G129_CC0.269-1.8943.6673.4428.49232.716-4.6820.1213.10414.719-5.96733.941
131CC_C43U42:A91G90_CC-0.0251.095-2.87-0.863-5.856-32.149-2.8060.083-2.63510.463-1.542-32.675
126CC_C48G47:C86G85_CC-0.6641.672-3.1950.725-5.571-33.078-3.752-1.262-2.8689.6971.261-33.539
122CC_C52A51:U82G81_CC-0.9931.881-3.366-2.543-13.69-38.177-4.16-1.164-2.62620.132-3.739-40.548
119CC_C55A54:C79G78_CC0.2041.325-3.0880.811-3.322-38.389-2.390.217-2.9715.041.23-38.535
118CC_C56C55:G78G77_CC-0.31.927-3.102-4.043-8.495-31.027-4.7710.088-2.51815.441-7.349-32.388
112CC_C63U62:G72G71_CC0.0581.895-3.048-5.726-9.439-28.699-5.141.058-2.27218.213-11.049-30.708
138CC_C94A95:U113G114_CC0.016-1.5193.178-2.31412.50329.923-4.657-0.3882.36322.9544.24832.456
142CC_C98G99:C109G110_CC0.176-1.8083.266-1.60814.11329.752-5.312-0.5532.19525.7212.93132.9
146CC_C104C105:G124G125_CC-0.624-2.0823.21-1.5668.71430.949-5.1630.8752.57215.9252.86332.161
11CC_G26G27:C136C137_CC0.329-1.7112.973-3.0537.5635.754-3.606-0.8812.53612.1194.89436.643
12CC_G27A28:U135C136_CC-0.739-1.4582.77-4.4467.2837.62-2.9470.6682.52311.1156.78838.541
18CC_G33C34:G129C130_CC0.584-1.6082.9790.3041.00834.392-2.861-0.9452.9371.704-0.51334.408
137CC_G37G106:A123C122_CC3.722-4.815-3.485119.32543.29477.751-2.208-2.975-0.95424.762-68.248139.3
136CC_G38G37:C122C121_CC0.3052.003-3.0177.037-4.117-28.992-4.61-0.698-2.718.02613.718-30.093
135CC_G39G38:C121C120_CC-0.0151.861-3.136-2.351-9.098-30.613-4.8230.347-2.48816.742-4.327-31.99
128CC_G46U45:G88C87_CC1.5652.172-3.0123.704-12.087-18.939-8.8832.936-1.62332.4629.947-22.739
127CC_G47G46:C87C86_CC-0.231.694-3.395-1.184-9.518-34.374-4.11-0.208-2.84615.73-1.956-35.648
125CC_G49C48:G85C84_CC0.0091.962-3.199-2.288-8.34-28.363-5.4130.449-2.52316.541-4.537-29.626
124CC_G50G49:C84C83_CC0.3311.863-3.302-3.631-8.183-34.563-4.1571.036-2.75613.495-5.987-35.669
121CC_G53C52:G81C80_CC0.3561.672-3.281-4.307-10.308-25.321-5.7521.686-2.34222.188-9.271-27.639
117CC_G57C56:G77C76_CC0.3531.639-3.628-2.18-16.118-39.346-3.930.712-2.75822.793-3.083-42.451
116CC_G58G57:C76C75_CC0.8242.478-3.1063.299-7.902-25.037-7.2081.054-2.31617.5857.341-26.439
115CC_G59G58:C75U74_CC0.5392.059-3.086-1.255-13.026-29.344-5.6321.158-1.99124.25-2.337-32.071
111CC_G64C63:G71C70_CC-0.4571.998-3.1440.085-10.097-25.746-6.27-0.975-2.21521.6290.183-27.624
141CC_G97C98:G110C111_CC-0.044-1.4993.1030.9926.8531.109-3.8560.2442.71712.578-1.82231.851
143CC_G99G100:C108C109_CC0.171-1.9333.4453.15912.89333.366-4.9040.1552.55321.431-5.2535.84
144CC_G100U101:C107C108_CC-0.026-1.0153.434.6611.348.628-2.0320.3733.12113.476-5.55850.05
16CC_U31C32:G131A132_CC0.044-1.3323.188-0.4376.27634.233-3.126-0.1372.90410.5510.73434.79
134CC_U40G39:C120A119_CC-0.9012.575-2.8870.462-5.672-26.504-6.641-2.017-2.2812.1940.993-27.097
132CC_U42A41:U92A91_CC0.4930.974-2.916.293-9.427-31.024-3.099-0.055-2.56216.93211.303-32.982
129CC_U45A44:U89G88_CC-0.2291.259-3.262-3.028-12.736-38.756-3.128-0.014-2.74218.558-4.413-40.827
114CC_U61G59:U74A73_CC0.7711.19-3.3466.785-1.521-52.338-1.4410.414-3.3811.7167.654-52.766
113CC_U62U61:A73G72_CC0.0611.418-3.339-0.743-4.671-34.98-3.0250.21-3.1277.727-1.23-35.288
140CC_U96G97:C111G112_CC-0.999-2.2933.245-0.50812.61320.928-8.5982.2351.63731.3161.26124.404

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.