A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6OM3  PDB ID: 6OM3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14II_DA5DG6:DC142DT143_JJ0.226-0.4963.226-3.013.81735.302-1.352-0.7963.1286.2584.93435.625
16II_DA7DA8:DT140DT141_JJ-0.8120.0773.436-2.088-1.69937.0510.3610.983.468-2.6693.28137.146
17II_DA8DT9:DA139DT140_JJ0.19-0.6353.362-0.887-1.53234.882-0.82-0.4553.38-2.5531.47934.925
119II_DA20DG21:DC127DT128_JJ-0.1840.4123.332-6.7665.56529.985-0.331-0.9913.31510.47712.73931.21
128II_DA29DA30:DT118DT119_JJ-1.0391.1233.464-4.6192.37237.1011.4110.9583.6253.7057.21637.45
129II_DA30DT31:DA117DT118_JJ0.055-0.3453.167-6.9364.35130.868-1.387-1.3113.0097.99912.75131.91
138II_DA39DG40:DC108DT109_JJ0.3671.1023.315-2.2763.39130.1121.402-1.173.386.494.35530.381
140II_DA41DC42:DG106DT107_JJ0.645-0.2723.094-3.596.03223.89-2.303-2.4922.81514.1848.44324.885
142II_DA43DG44:DC104DT105_JJ0.348-1.0763.077-2.263.2529.885-2.679-1.0932.9136.2684.35830.14
148II_DA49DG50:DC98DT99_JJ-1.1191.5213.537-8.3840.18936.6912.3320.5123.7020.29613.10937.605
151II_DA52DC53:DG95DT96_JJ0.515-1.2773.165-3.6734.86331.091-3.174-1.5732.8598.9646.77131.668
158II_DA59DA60:DT88DT89_JJ-0.187-0.2793.335-3.6090.29836.202-0.489-0.2143.3350.4775.7936.376
159II_DA60DA61:DT87DT88_JJ-0.184-0.1313.432-4.039-0.40139.026-0.144-0.2343.434-0.5996.02739.229
160II_DA61DC62:DG86DT87_JJ-0.298-0.263.163-6.328-2.60736.776-0.07-0.353.179-4.0889.92437.386
164II_DA65DC66:DG82DT83_JJ0.121-0.5333.4730.7332.07331.093-1.409-0.0773.4333.862-1.36631.169
168II_DA69DC70:DG78DT79_JJ-0.6240.8573.35-11.309-4.39836.8951.85-0.4983.276-6.72917.30438.773
172II_DA73DT74:DA74DT75_JJ0.033-1.1073.214-2.4692.77231.799-2.493-0.4923.0975.0384.48832.009
189II_DA90DA91:DT57DT58_JJ-1.6671.1083.522-8.184-0.13335.1961.8081.3783.798-0.21613.31336.105
190II_DA91DC92:DG56DT57_JJ0.377-0.1463.393-5.6333.45133.807-0.798-1.5373.265.8659.57234.428
196II_DA97DA98:DT50DT51_JJ-0.647-0.4993.3542.9552.47937.102-1.1121.4083.2563.882-4.62937.295
197II_DA98DG99:DC49DT50_JJ0.7650.1783.7115.015-1.87230.6410.744-0.3213.768-3.509-9.431.095
1102II_DA103DT104:DA44DT45_JJ-0.098-0.7813.454-3.0260.45230.696-1.561-0.4373.4360.8515.69930.844
1105II_DA106DC107:DG41DT42_JJ-0.467-0.5943.230.4383.14331.595-1.6490.9323.1515.754-0.80131.749
1112II_DA113DG114:DC34DT35_JJ0.2-0.7773.128-7.2446.58930.719-2.49-1.5582.78912.05913.25732.206
1119II_DA120DG121:DC27DT28_JJ-0.9932.4893.666-1.644-8.44245.5153.9281.1153.212-10.7982.10346.278
1123II_DA124DC125:DG23DT24_JJ0.338-1.0363.14-1.7532.91530.608-2.488-0.9593.0085.53.30830.792
1130II_DA131DG132:DC16DT17_JJ-0.4451.013.398-6.2233.0434.2161.194-0.2623.4965.10210.44434.889
1132II_DA133DT134:DA14DT15_JJ0.291-0.783.263-5.0820.81632.556-1.513-1.3683.1631.4458.99532.949
1134II_DA135DT136:DA12DT13_JJ-0.515-0.5673.2680.322.26428.102-1.6871.1313.2074.652-0.65728.193
1136II_DA137DT138:DA10DT11_JJ-0.803-1.1523.12-0.978-0.23331.73-2.0651.2963.15-0.4271.78831.745
1138II_DA139DC140:DG8DT9_JJ-0.033-1.1473.314-2.102-3.33334.057-1.406-0.2833.403-5.6673.57434.278
1140II_DA141DT142:DA6DT7_JJ0.042-0.4623.234-0.7860.22731.76-0.885-0.223.2290.4151.43731.77
1145II_DA146DT147:DA1DT2_JJ0.254-1.0643.4521.410.86130.185-2.224-0.1863.4291.653-2.70530.229
12II_DC3DG4:DC144DG145_JJ-0.1090.5533.7130.4631.34735.40.6830.2563.7292.214-0.76135.428
19II_DC10DC11:DG137DG138_JJ-0.4080.3053.301-2.6540.56532.6540.4430.263.3281.0034.7132.763
110II_DC11DC12:DG136DG137_JJ0.2210.0373.42-2.6693.43135.421-0.457-0.7633.3835.6134.36635.679
111II_DC12DG13:DC135DG136_JJ-0.504-0.1243.191-2.394.01734.097-0.8220.4883.1836.8114.05334.407
116II_DC17DC18:DG130DG131_JJ0.5262.3653.6620.289-8.08443.3213.96-0.6733.196-10.837-0.38844.034
117II_DC18DG19:DC129DG130_JJ0.0652.1273.760.372-1.3539.4393.332-0.0473.689-2.0-0.55139.463
122II_DC23DC24:DG124DG125_JJ-0.442-0.2723.231-1.2983.98840.721-0.820.4923.2045.7131.85940.927
123II_DC24DG25:DC123DG124_JJ0.267-0.1712.922-1.1817.90830.48-1.624-0.6882.77914.7262.19931.487
125II_DC26DT27:DA121DG122_JJ-0.951.1123.243-0.560.03136.9091.7511.4253.2580.0490.88536.913
127II_DC28DA29:DT119DG120_JJ-0.2972.6163.964-1.203-1.94140.3134.0510.2693.846-2.8131.74540.375
135II_DC36DG37:DC111DG112_JJ-0.090.5133.2370.6050.47136.1170.7610.2293.2420.759-0.97536.125
141II_DC42DA43:DT105DG106_JJ-0.2070.883.369-3.8456.94436.3430.401-0.2173.47710.9726.07537.171
144II_DC45DT46:DA102DG103_JJ-0.488-0.8713.1412.8391.95231.95-1.9041.3623.0313.533-5.13932.131
146II_DC47DT48:DA100DG101_JJ-1.5380.9583.421-4.053-4.65839.8231.9451.7523.426-6.7895.90840.28
150II_DC51DA52:DT96DG97_JJ0.042-0.8083.089-4.7027.20828.933-2.898-0.9572.77114.0399.15930.16
152II_DC53DC54:DG94DG95_JJ-0.668-0.4633.2350.6722.97630.443-1.4561.3963.1625.649-1.27630.592
153II_DC54DG55:DC93DG94_JJ0.421-0.0133.1661.8277.59828.12-1.637-0.4493.07715.268-3.67229.165
155II_DC56DT57:DA91DG92_JJ-0.382-0.5073.1054.3512.22732.424-1.2571.3792.9893.96-7.73832.78
161II_DC62DG63:DC85DG86_JJ-0.0910.1093.403-1.383.60631.791-0.48-0.0943.3966.5532.50832.018
163II_DC64DA65:DT83DG84_JJ-0.5150.293.128-3.3548.63134.665-0.7370.3673.14314.1745.50935.843
165II_DC66DG67:DC81DG82_JJ0.8160.1263.2053.0741.51433.999-0.023-0.9063.2672.582-5.2434.166
169II_DC70DG71:DC77DG78_JJ-0.720.8733.355-3.6032.50235.0221.0520.633.4624.1385.95735.288
175II_DC76DT77:DA71DG72_JJ-0.07-0.5583.3052.0071.49929.209-1.4270.5743.2612.965-3.9729.314
177II_DC78DC79:DG69DG70_JJ0.7651.0833.5716.742-3.15137.1242.115-0.2263.551-4.888-10.46137.837
178II_DC79DC80:DG68DG69_JJ-0.8570.9543.597-6.278-3.28235.3452.060.3963.592-5.3410.21336.026
179II_DC80DC81:DG67DG68_JJ0.4871.7713.546-0.827-3.47342.4962.807-0.7583.388-4.7821.13842.638
180II_DC81DC82:DG66DG67_JJ-1.1520.2483.372-7.8482.64834.142-0.0150.6493.554.42913.12935.103
181II_DC82DG83:DC65DG66_JJ0.0310.4593.156-2.3743.44536.8930.274-0.3573.1775.4233.73737.121
183II_DC84DG85:DC63DG64_JJ-0.371-0.4312.972-2.7354.73931.934-1.5290.2282.9018.5364.92632.387
191II_DC92DC93:DG55DG56_JJ-0.2830.433.393-3.6643.42732.7760.149-0.1513.436.036.44733.147
192II_DC93DG94:DC54DG55_JJ0.430.1213.331-2.3125.75230.034-0.925-1.2763.25610.9534.40330.653
194II_DC95DC96:DG52DG53_JJ0.282-1.2093.1662.4524.81830.917-3.091-0.0862.9618.951-4.55631.374
195II_DC96DA97:DT51DG52_JJ-0.62-1.0223.0033.2939.69630.332-3.3691.6392.48817.902-6.0831.976
1106II_DC107DT108:DA40DG41_JJ0.645-0.2543.3423.9851.06435.564-0.572-0.4583.3831.734-6.49835.794
1108II_DC109DC110:DG38DG39_JJ-0.1781.583.7512.221-13.57747.9462.9570.3883.209-16.319-2.6749.768
1109II_DC110DC111:DG37DG38_JJ-0.2060.6733.269-2.47-1.50132.5661.454-0.063.241-2.674.39332.691
1110II_DC111DT112:DA36DG37_JJ0.1031.5993.627-3.639-0.39235.1692.697-0.7623.582-0.6476.00335.353
1115II_DC116DT117:DA31DG32_JJ0.656-0.5453.1053.253.03932.459-1.464-0.633.0925.406-5.78132.754
1117II_DC118DC119:DG29DG30_JJ0.4810.0033.5671.2460.46236.116-0.066-0.5833.580.745-2.0136.14
1118II_DC119DA120:DT28DG29_JJ-0.5291.3793.4871.94-5.11740.0032.5960.9933.265-7.438-2.8240.36
1122II_DC123DA124:DT24DG25_JJ-0.0940.8133.344-3.7023.71640.950.74-0.2793.3985.2855.26541.271
1124II_DC125DG126:DC22DG23_JJ0.739-0.4693.1776.9510.47435.411-2.066-0.2633.01216.587-11.00737.508
1129II_DC130DA131:DT17DG18_JJ-1.0912.8213.671-2.974-1.53640.6734.2351.1983.634-2.2064.2740.805
1139II_DC140DA141:DT7DG8_JJ-1.0960.4713.536-2.215-1.42935.9070.9841.4313.575-2.3143.58736.0
1142II_DC143DC144:DG4DG5_JJ0.501-0.063.252-2.0313.26632.73-0.655-1.2253.1955.773.58832.949
1143II_DC144DG145:DC3DG4_JJ0.5070.5453.288-2.8912.73735.440.49-1.253.2694.4794.7335.656
13II_DG4DA5:DT143DC144_JJ-0.9830.3323.58-2.5283.0139.7930.1021.1163.6474.4093.70339.979
15II_DG6DA7:DT141DC142_JJ-0.312-0.3083.2350.664-0.42231.421-0.490.6993.232-0.78-1.22531.431
112II_DG13DG14:DC134DC135_JJ0.058-0.7393.067-1.3074.429.686-2.26-0.3592.9258.5242.53230.031
113II_DG14DT15:DA133DC134_JJ-0.09-0.7983.123.2043.26334.689-1.7910.6043.0155.443-5.34434.98
115II_DG16DC17:DG131DC132_JJ-0.7310.2363.020.350.13934.8470.3751.2693.0130.232-0.58434.849
118II_DG19DA20:DT128DC129_JJ-0.8712.083.5722.1191.87544.5892.5481.3593.6092.468-2.78944.674
120II_DG21DG22:DC126DC127_JJ-0.1390.4333.2-7.1684.67429.773-0.087-1.1183.1768.86813.60130.951
121II_DG22DC23:DG125DC126_JJ0.49-0.4563.175-1.9861.40434.942-0.961-1.1023.1242.3343.30335.024
124II_DG25DC26:DG122DC123_JJ0.475-0.2793.3418.39-1.07638.756-0.2810.3183.373-1.599-12.46339.634
132II_DG33DG34:DC114DC115_JJ0.135-0.1973.231-1.3794.48626.502-1.553-0.6383.1449.6882.97826.907
133II_DG34DT35:DA113DC114_JJ-0.253-0.6083.3710.8742.98435.224-1.4520.5493.3034.92-1.4435.356
136II_DG37DT38:DA110DC111_JJ-0.0630.4163.8051.834-0.21134.5350.7370.4353.795-0.356-3.08734.583
139II_DG40DA41:DT107DC108_JJ-1.3481.3093.477-8.7273.96343.5631.3190.8793.7655.26411.59244.555
143II_DG44DC45:DG103DC104_JJ0.063-0.3483.1241.1643.00737.522-0.910.0463.0894.664-1.80537.656
149II_DG50DC51:DG97DC98_JJ-0.377-0.1333.264-9.1311.89834.746-0.49-0.713.2453.10914.9635.939
154II_DG55DC56:DG92DC93_JJ-0.51-0.523.2791.1932.30735.069-1.2031.0223.2213.823-1.97735.162
162II_DG63DC64:DG84DC85_JJ0.252-0.2653.102-1.7453.83135.74-0.942-0.6423.0436.2162.83135.979
166II_DG67DT68:DA80DC81_JJ-0.3440.5613.5474.465-0.95937.5230.9991.153.47-1.484-6.9137.79
170II_DG71DG72:DC76DC77_JJ-0.0380.1813.337-3.542.04632.011-0.047-0.5753.3273.6916.38732.264
171II_DG72DA73:DT75DC76_JJ-0.2040.1223.172-5.8894.43936.659-0.381-0.4413.1596.9719.24837.369
182II_DG83DC84:DG64DC65_JJ0.572-0.3353.121-1.2084.39131.095-1.395-1.273.0238.1362.23931.419
184II_DG85DT86:DA62DC63_JJ-0.224-0.973.1651.3142.38834.104-2.0090.5793.0824.063-2.23634.209
193II_DG94DC95:DG53DC54_JJ0.764-0.6163.3580.9597.85631.169-2.532-1.2073.13514.333-1.74932.134
198II_DG99DG100:DC48DC49_JJ-1.3041.3413.638-7.249-5.3940.0072.5760.9743.608-7.75910.43540.973
199II_DG100DG101:DC47DC48_JJ0.8181.1423.3431.425-11.76637.8623.033-1.0432.903-17.614-2.13439.609
1100II_DG101DG102:DC46DC47_JJ-1.0120.2073.319-8.2471.5335.430.1070.4143.4662.47213.32236.379
1101II_DG102DA103:DT45DC46_JJ0.461-0.1733.3151.1861.25938.907-0.415-0.5453.321.89-1.77938.944
1113II_DG114DT115:DA33DC34_JJ-0.181-0.5673.222-2.9995.38928.637-2.256-0.2723.06810.7385.97629.28
1120II_DG121DG122:DC26DC27_JJ0.1771.753.447-2.4851.01234.4072.783-0.7063.4741.7084.19334.509
1121II_DG122DC123:DG25DC26_JJ-0.9370.4893.207-9.9171.23933.4380.6230.023.3562.09616.77534.859
1125II_DG126DT127:DA21DC22_JJ-0.167-0.2693.130.3512.41631.667-0.9130.3673.14.418-0.64131.759
1127II_DG128DT129:DA19DC20_JJ0.4570.7033.4513.041-0.25538.7071.091-0.2943.471-0.384-4.5838.822
1131II_DG132DA133:DT15DC16_JJ-1.11.1383.311-6.4952.18541.291.3540.8293.493.0739.13441.83
1144II_DG145DA146:DT2DC3_JJ-0.516-0.0413.164-1.8913.6140.871-0.4390.5363.1695.1542.741.065
11II_DT2DC3:DG145DA146_JJ-2.7760.8594.38-29.069-41.62746.1453.2560.7623.715-41.36228.88467.561
18II_DT9DC10:DG138DA139_JJ0.121-0.1873.599-3.963-2.01341.68-0.031-0.6243.578-2.8195.55141.906
114II_DT15DG16:DC132DA133_JJ0.7740.1673.3636.7754.92736.2-0.432-0.2613.447.802-10.72837.125
126II_DT27DC28:DG120DA121_JJ1.1131.5643.4675.457-4.64444.2212.501-0.9373.401-6.121-7.19344.769
130II_DT31DT32:DA116DA117_JJ0.6620.03.298-4.1925.84237.461-0.738-1.5433.1738.9956.45538.121
131II_DT32DG33:DC115DA116_JJ0.9130.033.0280.05214.61333.316-1.858-1.4582.79924.098-0.08536.297
134II_DT35DC36:DG112DA113_JJ0.964-0.0033.2975.8391.07339.767-0.13-0.723.3981.567-8.52740.19
137II_DT38DA39:DT109DA110_JJ-0.7542.1673.751-0.682-7.37447.123.3310.8733.404-9.1580.84747.666
145II_DT46DC47:DG101DA102_JJ1.5760.6273.3259.1962.51337.0430.615-1.1553.6333.876-14.18838.209
147II_DT48DA49:DT99DA100_JJ1.2771.6033.7335.9640.72838.6992.29-1.0663.9081.09-8.93439.145
156II_DT57DT58:DA90DA91_JJ1.6950.7263.5759.556-7.537.5242.088-1.2273.677-11.302-14.439.374
157II_DT58DA59:DT89DA90_JJ-0.8631.2363.716-2.852-6.72737.2052.8640.9223.502-10.4214.41737.891
167II_DT68DA69:DT79DA80_JJ0.1051.973.7543.417-3.3541.9923.120.2493.591-4.656-4.74942.252
173II_DT74DT75:DA73DA74_JJ-0.41-0.3563.339-1.7392.48633.074-1.0470.4213.3214.3563.04633.209
174II_DT75DC76:DG72DA73_JJ0.42-0.5233.1162.0782.44136.267-1.16-0.3983.0943.912-3.33136.404
176II_DT77DC78:DG70DA71_JJ-0.0960.8853.3931.6340.33242.5421.1840.3033.3940.457-2.2542.573
185II_DT86DT87:DA61DA62_JJ0.068-0.6333.1123.6210.18536.58-1.0290.3633.1010.294-5.75136.753
186II_DT87DT88:DA60DA61_JJ0.011-0.2243.3783.657-0.84638.203-0.2310.4563.369-1.289-5.57138.38
187II_DT88DT89:DA59DA60_JJ-0.1390.5113.3193.477-0.5437.9720.8510.6583.287-0.828-5.3338.129
188II_DT89DA90:DT58DA59_JJ0.2982.4393.67-2.167-7.66840.6254.319-0.6663.159-10.9183.08541.366
1103II_DT104DT105:DA43DA44_JJ0.376-0.7143.209-0.0962.50734.535-1.575-0.6473.154.2170.16234.623
1104II_DT105DA106:DT42DA43_JJ0.342-0.0913.1120.7884.06235.163-0.718-0.4523.0896.695-1.29835.398
1107II_DT108DC109:DG39DA40_JJ-0.210.1033.234-0.43.17735.451-0.290.2863.2325.2050.65435.591
1111II_DT112DA113:DT35DA36_JJ-0.60.7633.646-5.2424.31240.1940.5530.2033.7516.227.56240.739
1114II_DT115DC116:DG32DA33_JJ-0.138-0.2143.089-1.1594.61335.13-0.990.0663.0417.61.9135.44
1116II_DT117DC118:DG30DA31_JJ0.542-0.4673.3062.9551.24537.819-0.88-0.453.3211.917-4.54937.95
1126II_DT127DG128:DC20DA21_JJ0.2271.0093.38-0.810.98136.4271.473-0.4793.41.5691.29536.448
1128II_DT129DC130:DG18DA19_JJ-0.4532.1543.6141.055-2.95743.4393.2120.723.456-3.989-1.42343.547
1133II_DT134DA135:DT13DA14_JJ0.33-0.723.219-2.5645.29833.032-2.086-0.9793.0369.2274.46533.537
1135II_DT136DA137:DT11DA12_JJ1.028-0.3812.9630.1069.26335.418-1.747-1.6252.78214.913-0.17136.571
1137II_DT138DA139:DT9DA10_JJ0.2290.3083.112-0.16-1.6543.3570.569-0.3253.098-2.2330.21643.387
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1231UU_DT87DT88:DA60DA61_VV0.107-0.2323.2053.407-1.60238.412-0.1570.2513.21-2.428-5.16438.589
1232UU_DT88DT89:DA59DA60_VV-0.2650.4633.2192.0541.08536.3680.5920.7043.2121.736-3.28736.44
1233UU_DT89DA90:DT58DA59_VV0.0582.0353.7032.312-1.7539.933.1980.2113.612-2.559-3.38140.031
1248UU_DT104DT105:DA43DA44_VV0.138-0.7572.995-0.2591.8733.633-1.582-0.2772.9493.2290.44833.684
1249UU_DT105DA106:DT42DA43_VV0.1290.1663.3961.4241.90438.2690.005-0.0113.4022.901-2.16938.34
1252UU_DT108DC109:DG39DA40_VV-0.2420.2843.3552.0584.06637.067-0.1080.6573.3496.366-3.22237.336
1256UU_DT112DA113:DT35DA36_VV-0.6760.5323.657-6.6823.10939.8780.3720.1243.7474.5119.69740.526
1259UU_DT115DC116:DG32DA33_VV-0.416-0.1843.232-1.1086.09633.162-1.2930.543.16110.5671.92133.72
1261UU_DT117DC118:DG30DA31_VV0.5-0.2993.273.342.07137.382-0.734-0.343.283.22-5.19437.581
1271UU_DT127DG128:DC20DA21_VV-0.0141.083.4611.6580.65438.771.5410.2353.4740.984-2.49738.81
1273UU_DT129DC130:DG18DA19_VV0.0811.7523.6151.115-4.18542.8612.8320.0083.438-5.71-1.52143.069
1278UU_DT134DA135:DT13DA14_VV0.538-0.4483.065-0.9187.72733.666-1.856-1.0382.87913.1241.55934.528
1280UU_DT136DA137:DT11DA12_VV0.963-0.3353.0390.4397.70236.795-1.445-1.4422.92312.04-0.68637.567
1282UU_DT138DA139:DT9DA10_VV-0.3520.6183.3291.694-3.72344.1371.1670.6253.254-4.941-2.24844.317
1286UU_DT142DC143:DG5DA6_VV-0.112-0.0033.358-2.4062.00137.027-0.278-0.1543.3543.1433.7837.154

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.