A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search for released structures

NDB ID: 6P0T  PDB ID: 6P0T 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA1:DT27_D1.4060.121-0.2530.421-14.8056.947
12C_DA2:DT26_D0.098-0.0220.0391.572-32.2984.676
115C_DA15:DT13_D-0.0630.1690.5871.705-0.76312.144
116C_DA16:DT12_D0.120.0810.73913.068-11.4422.267
118C_DA18:DT10_D0.21-0.2080.98714.045-13.17-6.468
120C_DA20:DT8_D-0.492-0.0570.134-5.341-14.8249.535
123C_DA23:DT5_D-0.33-0.1830.94811.988-7.886-1.203
125C_DA25:DT3_D0.228-0.0950.096-3.573-18.1197.459
117C_DC17:DG11_D0.171-0.0990.9322.305-19.5036.858
121C_DC21:DG7_D0.646-0.225-0.1645.964-18.522.848
124C_DC24:DG4_D0.543-0.2080.5435.478-1.564.507
14C_DG4:DC24_D-0.2760.052-0.348-6.465-13.7371.351
17C_DG7:DC21_D-1.416-0.4960.679-8.982-5.0615.579
19C_DG9:DC19_D-1.138-0.495-0.09-17.765-22.446-0.853
119C_DG19:DC9_D-0.165-0.3780.66210.176-20.8613.039
13C_DT3:DA25_D0.00.224-0.41219.387-12.19617.491
15C_DT5:DA23_D0.194-0.1170.476.38-29.3497.716
16C_DT6:DA22_D-0.2850.221.24-15.743-31.1652.482
18C_DT8:DA20_D0.779-0.4050.4636.198-2.7120.319
110C_DT10:DA18_D0.126-0.1461.005-19.734-28.537-1.166
111C_DT11:DA17_D-0.4290.0660.962-5.1-29.46512.544
112C_DT12:DA16_D-0.50.155-0.014-3.883-30.47910.474
113C_DT13:DA15_D0.188-0.1260.083-5.775-25.4275.631
114C_DT14:DA14_D-0.591-0.2640.272-7.547-21.109-0.822
122C_DT22:DA6_D-0.573-0.2410.388-1.099-20.0540.606
126C_DT26:DA2_D-0.196-0.0530.492-10.748-25.8271.827
127C_DT27:DA1_D0.290.0260.508-11.562-17.6914.368

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.