A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6P0U  PDB ID: 6P0U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA1:DT27_D-0.13-0.1260.53815.577-17.3423.135
12C_DA2:DT26_D0.0180.0190.688.317-17.5993.659
115C_DA15:DT13_D0.0090.0760.041-2.629-1.34315.212
116C_DA16:DT12_D0.279-0.0380.5212.489-17.6691.634
118C_DA18:DT10_D-0.056-0.0920.74521.275-6.0270.051
120C_DA20:DT8_D-0.255-0.1050.411-2.019-4.6395.525
123C_DA23:DT5_D-0.117-0.0850.2989.575-5.7120.738
125C_DA25:DT3_D-0.047-0.147-0.031-4.431-5.519-0.044
117C_DC17:DG11_D0.897-0.2680.677-0.763-14.1634.596
121C_DC21:DG7_D0.872-0.5620.47-3.054-3.1-3.506
124C_DC24:DG4_D0.4290.037-0.39713.968-10.0064.71
14C_DG4:DC24_D-0.40.008-0.255-5.723-14.0434.588
17C_DG7:DC21_D-1.295-0.3260.5982.3330.7374.787
19C_DG9:DC19_D-0.137-0.1570.063-10.419-25.386-0.866
119C_DG19:DC9_D-0.763-0.30.3889.751-13.7612.067
13C_DT3:DA25_D-0.549-0.1720.4851.898-9.7810.645
15C_DT5:DA23_D-0.323-0.1470.255-2.892-27.0374.248
16C_DT6:DA22_D-0.517-0.2180.549-6.768-16.996-5.997
18C_DT8:DA20_D0.342-0.3121.0611.379-12.1045.179
110C_DT10:DA18_D0.437-0.2380.661-18.75-16.961-3.0
111C_DT11:DA17_D-0.073-0.1950.554-15.258-14.938-4.386
112C_DT12:DA16_D0.333-0.2460.413-11.308-19.925-2.247
113C_DT13:DA15_D0.181-0.2970.13-11.422-19.5-0.081
114C_DT14:DA14_D-0.156-0.1070.034-13.304-18.404-1.027
122C_DT22:DA6_D-0.42-0.1190.3166.528-8.33-3.128
126C_DT26:DA2_D0.088-0.1080.566-2.701-18.7682.898
127C_DT27:DA1_D0.371-0.2780.573-5.576-13.8356.864

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.