6P0U: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6P0U PDB ID: 6P0U

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	C_DA1:DT27_D	-0.13	-0.126	0.538	15.577	-17.342	3.135
1	2	C_DA2:DT26_D	0.018	0.019	0.68	8.317	-17.599	3.659
1	15	C_DA15:DT13_D	0.009	0.076	0.041	-2.629	-1.343	15.212
1	16	C_DA16:DT12_D	0.279	-0.038	0.52	12.489	-17.669	1.634
1	18	C_DA18:DT10_D	-0.056	-0.092	0.745	21.275	-6.027	0.051
1	20	C_DA20:DT8_D	-0.255	-0.105	0.411	-2.019	-4.639	5.525
1	23	C_DA23:DT5_D	-0.117	-0.085	0.298	9.575	-5.712	0.738
1	25	C_DA25:DT3_D	-0.047	-0.147	-0.031	-4.431	-5.519	-0.044
1	17	C_DC17:DG11_D	0.897	-0.268	0.677	-0.763	-14.163	4.596
1	21	C_DC21:DG7_D	0.872	-0.562	0.47	-3.054	-3.1	-3.506
1	24	C_DC24:DG4_D	0.429	0.037	-0.397	13.968	-10.006	4.71
1	4	C_DG4:DC24_D	-0.4	0.008	-0.255	-5.723	-14.043	4.588
1	7	C_DG7:DC21_D	-1.295	-0.326	0.598	2.333	0.737	4.787
1	9	C_DG9:DC19_D	-0.137	-0.157	0.063	-10.419	-25.386	-0.866
1	19	C_DG19:DC9_D	-0.763	-0.3	0.388	9.751	-13.761	2.067
1	3	C_DT3:DA25_D	-0.549	-0.172	0.485	1.898	-9.781	0.645
1	5	C_DT5:DA23_D	-0.323	-0.147	0.255	-2.892	-27.037	4.248
1	6	C_DT6:DA22_D	-0.517	-0.218	0.549	-6.768	-16.996	-5.997
1	8	C_DT8:DA20_D	0.342	-0.312	1.061	1.379	-12.104	5.179
1	10	C_DT10:DA18_D	0.437	-0.238	0.661	-18.75	-16.961	-3.0
1	11	C_DT11:DA17_D	-0.073	-0.195	0.554	-15.258	-14.938	-4.386
1	12	C_DT12:DA16_D	0.333	-0.246	0.413	-11.308	-19.925	-2.247
1	13	C_DT13:DA15_D	0.181	-0.297	0.13	-11.422	-19.5	-0.081
1	14	C_DT14:DA14_D	-0.156	-0.107	0.034	-13.304	-18.404	-1.027
1	22	C_DT22:DA6_D	-0.42	-0.119	0.316	6.528	-8.33	-3.128
1	26	C_DT26:DA2_D	0.088	-0.108	0.566	-2.701	-18.768	2.898
1	27	C_DT27:DA1_D	0.371	-0.278	0.573	-5.576	-13.835	6.864

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.