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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
6P0U
PDB ID:
6P0U
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
C_DA1:DT27_D
-0.13
-0.126
0.538
15.577
-17.342
3.135
1
2
C_DA2:DT26_D
0.018
0.019
0.68
8.317
-17.599
3.659
1
15
C_DA15:DT13_D
0.009
0.076
0.041
-2.629
-1.343
15.212
1
16
C_DA16:DT12_D
0.279
-0.038
0.52
12.489
-17.669
1.634
1
18
C_DA18:DT10_D
-0.056
-0.092
0.745
21.275
-6.027
0.051
1
20
C_DA20:DT8_D
-0.255
-0.105
0.411
-2.019
-4.639
5.525
1
23
C_DA23:DT5_D
-0.117
-0.085
0.298
9.575
-5.712
0.738
1
25
C_DA25:DT3_D
-0.047
-0.147
-0.031
-4.431
-5.519
-0.044
1
17
C_DC17:DG11_D
0.897
-0.268
0.677
-0.763
-14.163
4.596
1
21
C_DC21:DG7_D
0.872
-0.562
0.47
-3.054
-3.1
-3.506
1
24
C_DC24:DG4_D
0.429
0.037
-0.397
13.968
-10.006
4.71
1
4
C_DG4:DC24_D
-0.4
0.008
-0.255
-5.723
-14.043
4.588
1
7
C_DG7:DC21_D
-1.295
-0.326
0.598
2.333
0.737
4.787
1
9
C_DG9:DC19_D
-0.137
-0.157
0.063
-10.419
-25.386
-0.866
1
19
C_DG19:DC9_D
-0.763
-0.3
0.388
9.751
-13.761
2.067
1
3
C_DT3:DA25_D
-0.549
-0.172
0.485
1.898
-9.781
0.645
1
5
C_DT5:DA23_D
-0.323
-0.147
0.255
-2.892
-27.037
4.248
1
6
C_DT6:DA22_D
-0.517
-0.218
0.549
-6.768
-16.996
-5.997
1
8
C_DT8:DA20_D
0.342
-0.312
1.061
1.379
-12.104
5.179
1
10
C_DT10:DA18_D
0.437
-0.238
0.661
-18.75
-16.961
-3.0
1
11
C_DT11:DA17_D
-0.073
-0.195
0.554
-15.258
-14.938
-4.386
1
12
C_DT12:DA16_D
0.333
-0.246
0.413
-11.308
-19.925
-2.247
1
13
C_DT13:DA15_D
0.181
-0.297
0.13
-11.422
-19.5
-0.081
1
14
C_DT14:DA14_D
-0.156
-0.107
0.034
-13.304
-18.404
-1.027
1
22
C_DT22:DA6_D
-0.42
-0.119
0.316
6.528
-8.33
-3.128
1
26
C_DT26:DA2_D
0.088
-0.108
0.566
-2.701
-18.768
2.898
1
27
C_DT27:DA1_D
0.371
-0.278
0.573
-5.576
-13.835
6.864
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.