A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6P1A  PDB ID: 6P1A 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14D_DA4:DT18_E-0.6360.307-0.241-5.605-7.6653.785
18D_DA8:DT14_E0.156-0.160.43-0.001-3.256-2.508
111D_DA11:DT11_E0.073-0.0910.011-1.604-5.097-1.041
112D_DA12:DT10_E0.09-0.1150.16-0.771-7.4061.313
113D_DA13:DT9_E0.041-0.1680.081-2.657-9.1484.082
116D_DA16:DT6_E0.13-0.1330.3350.555-2.515-0.615
119D_DA19:DT3_E0.102-0.1320.0680.722-3.0080.638
120D_DA20:DT2_E0.044-0.152-0.0070.762-4.2873.773
11D_DC1:DG21_E0.209-0.161-0.181-2.194-5.8451.587
13D_DC3:DG19_E0.215-0.109-0.321-0.524-2.1912.09
110D_DC10:DG12_E0.168-0.1290.125-1.273-6.551-1.43
118D_DC18:DG4_E0.151-0.1290.31-4.993-3.564-0.867
17D_DG7:DC15_E-0.174-0.150.264-4.511-2.6020.126
19D_DG9:DC13_E-0.142-0.1260.252.06-4.3530.883
115D_DG15:DC7_E-0.201-0.1250.163-1.674-2.0981.506
117D_DG17:DC5_E-0.126-0.1590.4370.843-7.127-1.673
121D_DG21:DC1_E-0.191-0.144-0.120.987-5.7780.674
12D_DT2:DA20_E-0.083-0.155-0.042-3.059-8.2641.329
15D_DT5:DA17_E-0.045-0.137-0.205-3.757-7.7854.191
16D_DT6:DA16_E-0.151-0.1290.073-4.815-8.108-0.222
114D_DT14:DA8_E-0.059-0.140.46-5.864-6.9023.246
124F_DA4:DT18_G-0.7210.236-0.193-6.006-4.6298.822
128F_DA8:DT14_G0.106-0.0810.086-0.355-1.519-2.474
131F_DA11:DT11_G0.07-0.093-0.337-4.345-5.497-0.877
132F_DA12:DT10_G0.073-0.101-0.177-3.668-7.1490.763
133F_DA13:DT9_G-0.9720.7120.9881.81-14.04819.861
136F_DA16:DT6_G0.118-0.1370.2222.4731.5670.796
139F_DA19:DT3_G0.08-0.1-0.152-3.947-3.4410.156
140F_DA20:DT2_G0.081-0.181-0.449-3.366-1.0532.56
122F_DC1:DG21_G0.187-0.142-0.472-2.19-4.421.161
123F_DC3:DG19_G1.5561.0840.086-1.147-10.86718.89
130F_DC10:DG12_G0.159-0.1190.251-4.577-5.297-2.022
138F_DC18:DG4_G0.197-0.166-0.422-2.629-4.5450.507
127F_DG7:DC15_G-0.209-0.1480.045-2.981-3.170.728
129F_DG9:DC13_G-0.171-0.1180.194-0.011-4.3990.461
135F_DG15:DC7_G-0.214-0.160.4050.93.1081.632
137F_DG17:DC5_G-0.176-0.122-0.0183.094-4.3210.32
141F_DG21:DC1_G-0.17-0.229-0.815-1.613-0.3950.782
125F_DT5:DA17_G-0.06-0.201-0.489-4.493-3.4355.99
126F_DT6:DA16_G-0.068-0.096-0.056-2.986-2.101-0.085
134F_DT14:DA8_G0.8530.2920.708-7.935-9.70512.846

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.