A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: 6P1N  PDB ID: 6P1N 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16T_DA7:DT3_P0.163-0.1630.3389.259-14.3020.767
11T_DC1:DG4_D0.048-0.1220.292-7.763-12.528-1.92
14T_DC4:DG1_D0.248-0.145-0.29113.4732.484-1.058
17T_DC8:DG2_P0.256-0.14-0.17213.955-11.6010.311
12T_DG2:DC3_D-0.112-0.1480.1660.883-9.258-0.707
13T_DG3:DC2_D-0.195-0.1990.205-0.007-7.977-2.836
18T_DG9:DC1_P-0.105-0.1590.025-2.14-9.849-1.173
15T_DT6:DA4_P0.024-0.154-0.20810.182-1.8992.758

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.