A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: 6P2H  PDB ID: 6P2H 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A23:G46_A-4.6193.2281.012-21.952-12.58560.308
115A_A24:U75_A1.032-3.762-1.12728.97-14.70172.827
113A_A30:U40_A0.129-0.206-0.0231.535-3.1530.799
114A_A31:U39_A0.319-0.3090.28611.898-2.3365.225
126A_A33:A67_A4.1551.8270.049-5.163-8.484-114.36
117A_A55:U73_A0.065-0.182-0.092-3.306-4.2293.199
121A_A59:U69_A0.532-0.428-0.0783.157-6.711-9.416
122A_A60:A68_A-1.2361.756-0.316-8.634-27.57918.712
125A_A65:A35_A4.6621.231-0.129-1.4991.92-107.284
19A_C26:G44_A0.499-0.128-0.0543.045-5.6171.508
111A_C28:G42_A0.184-0.515-0.2580.939-3.6182.52
112A_C29:G41_A0.597-0.347-0.034-1.256-4.8121.942
116A_C54:G74_A0.5960.270.2522.796-7.4564.692
123A_C61:G38_A-0.159-0.020.242-12.405-13.383-1.659
124A_C62:G37_A-0.068-0.1440.847-1.897-16.064-4.598
12A_G18:C82_A-0.102-0.226-0.281-7.994-16.1331.41
13A_G19:C81_A-0.529-0.112-0.143-22.637-10.111-0.332
15A_G21:C79_A0.05-0.041-0.2626.5453.401-1.99
118A_G56:C72_A-0.193-0.473-0.029-4.018-11.179-2.637
120A_G58:C70_A-0.418-0.123-0.156-3.386-2.2664.906
11A_GTP17:C83_A-0.434-0.172-0.0583.216-2.15-1.615
14A_U20:A80_A0.012-0.1270.366-13.797-4.036-7.35
16A_U22:A52_A0.2310.047-0.0698.1080.7910.356
18A_U25:A45_A0.217-0.226-0.3016.663-1.902-6.542
110A_U27:G43_A2.462-0.569-0.3532.467-3.9070.183
127A_U34:A66_A3.776-1.676-0.683-0.546-6.553-99.731
119A_U57:G71_A1.989-0.904-0.3273.442-11.305-13.719

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.