A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: 6QHD  PDB ID: 6QHD 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11CC_DA1002DG1003:DC1017DT1018_DD-0.1640.2073.347-1.5445.71936.541-0.4650.0453.3449.0482.44237.002
13CC_DA1004DT1005:DA1015DT1016_DD0.002-0.8013.1952.2062.75527.716-2.290.5023.0935.721-4.58127.936
17CC_DA1008DC1009:DG1011DT1012_DD0.6170.3063.132-0.857.06929.862-0.765-1.3273.10213.4781.62130.68
112CC_DA1013DA1014:DT1006DT1007_DD0.206-0.163.096-2.137-0.88835.152-0.139-0.6413.081-1.4693.53335.225
113CC_DA1014DA1015:DT1005DT1006_DD-0.053-0.3373.33-0.294-5.40236.6340.2130.0423.344-8.5370.46537.018
114CC_DA1015DT1016:DA1004DT1005_DD0.033-0.8623.157-1.1530.88929.098-1.901-0.3073.1261.7682.29329.134
18CC_DC1009DG1010:DC1010DG1011_DD-1.0981.1513.267-2.5922.11440.41.4221.293.3813.0553.74540.532
12CC_DG1003DA1004:DT1016DC1017_DD-0.027-0.0133.2860.14-2.82541.9360.2760.0523.28-3.942-0.19642.027
19CC_DG1010DG1011:DC1009DC1010_DD1.1311.0313.1722.232-0.90837.2731.727-1.4783.207-1.418-3.48737.348
110CC_DG1011DG1012:DC1008DC1009_DD-0.4740.7143.210.2948.88632.601-0.2260.8643.28215.474-0.51333.76
111CC_DG1012DA1013:DT1007DC1008_DD0.098-0.4673.4725.7364.93634.062-1.5690.7543.3468.299-9.64434.868
116CC_DG1017DC1018:DG1002DC1003_DD0.3540.263.1822.2584.11733.936-0.193-0.2523.2077.011-3.84634.25
14CC_DT1005DT1006:DA1014DA1015_DD0.073-0.3093.464-1.208-6.44135.9920.455-0.2943.462-10.3181.93536.564
15CC_DT1006DT1007:DA1013DA1014_DD-0.179-0.2433.044.238-2.25734.365-0.0860.9043.007-3.797-7.1334.689
16CC_DT1007DA1008:DT1012DA1013_DD-0.446-0.2273.573-3.8217.99237.848-1.4060.1613.48312.1195.79538.834
115CC_DT1016DG1017:DC1003DA1004_DD0.1760.193.4262.2821.06142.5460.15-0.0013.4341.461-3.14142.617

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.