A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2020 number of released structures: 10887
Search for released structures

NDB ID: 6QNR  PDB ID: 6QNR 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
1213_A26:G558_13611
13413_A32:U552_13120
13513_A33:U551_13120
14313_A53:U358_13120
14613_A55:U368_13221
14913_A60:G107_1360
16513_A109:G324_131011
18813_A119:U287_13424
111013_A140:U223_13120
111113_A141:U222_13120
111313_A143:G220_1310
113613_A149:A172_1345
113813_A151:U170_13424
112913_A195:U180_13424
113013_A196:A179_1345
19313_A243:A282_1345
19413_A246:G281_131011
116313_A300:U565_1350
16613_A327:U323_13424
16713_A329:C322_13425
17413_A338:G351_1318
116413_A383:G380_1300
116913_A389:U375_13120
117313_A393:U367_13120
119113_A430:A414_1345
119213_A431:U429_13323
119313_A432:G410_131011
120013_A439:U494_13424
120113_A440:G493_131011
120813_A448:U486_13424
121013_A452:U480_13424
121113_A453:C479_13425
122913_A520:G529_131011
118413_A547:U497_13424
123613_A563:U884_13221
131313_A611:G629_1318
131613_A614:U626_13120
126113_A632:G606_1300
126913_A640:U598_13120
127513_A648:U591_13120
128113_A655:U751_13120
128913_A663:G742_1318
130013_A675:A715_1300
130113_A676:G714_1318
130913_A684:A706_1300
131213_A687:G703_131011
132413_A722:A733_1321
127913_A753:U652_13424
125413_A759:U582_13424
132913_A766:U813_13424
133013_A768:C811_1310
133913_A780:A802_13100
134013_A781:U801_13424
134113_A782:G800_131011
135913_A860:G869_131011
136613_A889:A908_1382
136813_A892:G906_131011
1713_A914:G21_13100
1813_A915:U13_13323
11113_A918:U17_13120
11213_A919:A16_1310
11613_A923:U1393_13120
12613_A935:U1380_13120
12813_A937:C1378_1360
12913_A938:C934_13226
141613_A986:U1219_13120
142513_A1041:U999_13120
142813_A1044:U992_13424
144713_A1055:C1200_13425
148213_A1123:U1150_1310
142113_A1213:A1046_1321
138213_A1225:U955_13120
138513_A1229:U952_13120
139213_A1236:G945_1318
149913_A1238:U1301_13424
150013_A1239:A1299_1300
150513_A1245:U1292_13120
150813_A1248:A1289_1345
151013_A1252:A1285_1321
141213_A1360:A978_1345
140813_A1374:U1348_1320
140913_A1375:A1346_1382
153513_A1460:G1441_131011
154313_A1468:G1432_131011
154813_A1473:U1427_13120
155813_A1483:G1417_131011
157113_A1499:C1403_1350
157213_A1500:4OC1402_1310
157613_A1507:U1528_13120
158213_A1513:U1522_13120
158513_A1531:U41_4K120
1513_C23:G11_13119
1313_C25:G9_13119
13613_C34:G550_13119
13813_C36:G548_13119
14113_C47:G361_13119
14413_C54:G357_13119
14813_C58:G354_13119
15213_C63:G104_13119
15413_C67:G102_1310
15713_C74:G96_1300
15813_C75:G95_13119
16013_C77:G92_1310
19613_C123:G238_13119
110313_C131:G231_13119
110413_C132:G230_13119
110613_C136:G227_13119
110713_C137:G226_13119
113713_C150:A171_1300
113913_C153:C169_1310
114013_C154:G167_1310
114113_C155:G166_1310
112713_C193:G184_13119
112813_C194:G183_13119
111713_C201:G216_13122
18913_C240:G286_13119
19013_C241:G285_13119
19113_C242:G284_13119
19213_C245:C283_1310
114713_C248:G276_13119
18513_C290:G310_13119
18613_C291:G309_13119
116013_C295:G302_13119
17013_C334:G319_13119
17113_C335:G318_13119
17213_C336:G317_13119
17313_C337:G316_13119
17513_C339:G350_13119
17713_C341:G348_13119
17813_C342:G347_1310
116613_C385:G378_13119
116713_C386:G377_13119
117013_C390:G371_13119
117513_C395:G46_13119
117713_C398:G44_13119
117913_C400:G42_13119
118013_C401:G41_13119
118213_C403:G39_13119
119413_C433:G409_13119
119613_C435:G407_13119
119713_C436:G406_13119
120213_C442:G492_13119
120313_C443:G491_13119
120413_C444:G490_13122
121213_C454:A478_1300
121313_C455:G477_1310
121413_C456:G476_13119
121513_C457:G475_1300
121613_C458:G474_13119
121913_C501:G544_13119
122113_C503:G542_13119
122213_C504:G541_13119
123413_C507:G524_13119
123513_C508:A510_1300
122313_C511:G540_13119
122513_C513:G538_13119
122613_C514:G537_13119
123113_C522:7MG527_13119
123913_C569:G881_13119
131413_C612:G628_13119
131513_C613:G627_13119
131713_C615:G625_13119
132013_C618:A622_1320
126313_C634:G604_13119
127013_C643:G597_13119
127213_C645:G594_13119
127413_C647:G592_13119
127813_C651:G588_1310
128213_C656:G750_13119
130413_C679:G711_13119
130513_C680:G710_13119
130613_C681:G709_13119
132213_C689:G698_13119
132713_C726:G731_13119
125113_C756:G585_13119
125713_C762:G579_13119
125913_C764:G577_13119
133213_C770:G809_13119
133813_C779:G803_13119
134213_C783:G799_13119
134313_C784:G798_13119
134713_C817:G1529_13119
124213_C822:G878_13119
124413_C824:G876_13119
124613_C826:G874_13119
134813_C848:G838_13119
134913_C849:G837_13119
135613_C856:G830_13119
135713_C857:G829_13119
136113_C862:G867_13119
136913_C893:U244_13118
137213_C896:G903_13119
137313_C897:G902_13119
11713_C924:G1392_13119
12213_C930:G1387_13119
12313_C931:G1386_1310
12413_C932:G1385_13119
12713_C936:G1379_13119
137613_C940:G1343_13119
139513_C962:G973_13119
141413_C984:G1221_13119
141513_C985:G1220_13119
141913_C989:G1216_13119
142013_C990:G1215_1310
143013_C1006:G1023_1300
143113_C1007:G1022_13119
143213_C1008:G1021_1300
143913_C1028:G1033_1300
144013_C1028A:G1032B_13119
144113_C1028B:G1032A_1310
142213_C1037:G1003_13119
142313_C1038:G1002_1310
142713_C1043:G998_1310
142913_C1045:G993_13119
144513_C1051:2MG1207_13119
145113_C1059:G1198_13119
145213_C1060:G1197_13119
145513_C1063:G1193_13119
145713_C1066:A1191_13425
145913_C1069:G1106_13119
146113_C1071:G1104_13119
146513_C1075:G1082_13119
146613_C1076:G1081_13119
147213_C1113:G1187_13119
147313_C1114:G1186_13119
147413_C1115:G1185_13119
147513_C1116:G1184_13119
147713_C1118:G1155_13119
147813_C1119:G1154_13119
148413_C1128:C1145_1300
148513_C1129:G1143_13119
148613_C1132:G1142_13119
149013_C1158:G1181_13119
149213_C1161:G1175_13119
149313_C1162:G1174_13119
149413_C1163:G1173_13119
149613_C1165:G1171_1310
138313_C1226:G954_13119
138413_C1228:G953_13119
138613_C1230:G951_13119
139013_C1234:G947_13119
139313_C1237:G1337_13119
150213_C1242:G1295_13119
150313_C1243:G1294_13119
150413_C1244:G1293_13119
150613_C1246:G1291_13119
150913_C1249:A1288_13425
151213_C1254:G1283_13119
151513_C1259:G1276_13119
151613_C1260:G1274_13119
151713_C1262:G1273_13119
151813_C1263:G1272_1310
151913_C1264:G1271_13119
152113_C1303:G1334_13119
153113_C1314:G1323_13119
141113_C1317:C979_1300
140013_C1366:G1356_13119
140113_C1367:G1355_13119
140313_C1369:G1353_13119
153413_C1459:G1447_13119
153813_C1463:G1438_13119
154013_C1465:U1436_1300
154113_C1466:G1435_13119
155213_C1477:G1423_13119
155313_C1478:G1422_13119
155413_C1479:G1421_13119
155913_C1484:G1416_13119
156513_C1490:G1410_13119
156913_C1496:G1405_13119
157313_C1501:G1401_13119
157813_C1509:G1526_13119
158313_C1514:G1521_13119
158413_C1515:G1520_13119
158713_C1533:U39_4K00
158813_C1535:G37_4K10
158913_C1538:G34_4K119
159013_C1539:G33_4K119
1113_G7:U560_1300
1613_G22:U12_13128
13013_G27:C556_13119
13113_G28:C555_13119
13213_G29:C554_13119
13713_G35:C549_13119
14213_G52:U359_13128
14713_G57:C355_13119
15013_G61:C106_13119
15313_G66:C103_13119
15513_G68:A101_1318
15613_G69:C99_1310
15913_G76:U93_1300
16113_G78:C91_13119
16213_G79:U89_1310
16313_G81:C88_13119
17913_G111:G331_1320
18013_G112:A315_1318
18113_G113:C314_13119
18313_G115:C312_13119
19513_G122:U239_13128
19713_G124:C237_13119
19913_G126:C235_13119
110013_G127:C234_13119
110113_G128:C233_13119
111813_G129A:C187_1360
110813_G138:C225_13119
110913_G139:C224_13119
111213_G142:C221_1310
113113_G144:C178_1310
113213_G145:C177_13119
113313_G146:C176_13119
113413_G147:C175_13119
113513_G148:C174_1310
114213_G156:C165_13119
114313_G157:U164_13128
114413_G158:C163_1310
114513_G159:A162_1300
111913_G191A:C186F_13119
112013_G191B:C186E_13119
112113_G191C:C186D_1310
112313_G191E:C186B_13119
112513_G191:C186_13119
111413_G198:C219_13119
111513_G199:C218_13119
111613_G200:C217_1310
114613_G247:C277_13119
115113_G254:C272_13119
115213_G255:C271_13119
115413_G257:C269_13119
115513_G258:C268_13119
115613_G259:C267_13119
115713_G260:G265_1340
18413_G289:C311_13119
18713_G292:C308_13119
115813_G293:U304_13128
116213_G299:G566_1336
16813_G332:A321_1318
16913_G333:C320_13119
116513_G384:C379_13119
117113_G391:C370_13119
117213_G392:C369_13119
117413_G394:C366_1350
117613_G396:U45_13128
117813_G399:C43_13119
118113_G402:C40_13119
118513_G423:U420_1360
118613_G424:C419_1310
118713_G425:C418_13119
118813_G426:C417_13119
119013_G428:A415_1300
119913_G438:A496_131011
120513_G445:C489_13119
120613_G446:C488_13119
120713_G447:A487_13911
120913_G450:C483_13119
121713_G464:A468_131011
121813_G500:C545_13119
122013_G502:C543_13119
123213_G505:C526_13119
123313_G506:C525_13119
122713_G515:C536_13119
123013_G521:C528_13119
123713_G567:C883_13119
123813_G568:C882_13119
124813_G570:C866_13119
124013_G575:C880_13119
131813_G616:C624_13119
131913_G617:C623_13119
126213_G633:U605_13128
126413_G635:U603_13128
126613_G637:C601_13119
126713_G638:C600_13119
126813_G639:C599_13119
127113_G644:C596_13119
127613_G649:C590_13119
127713_G650:C589_13119
128013_G654:C754_13119
128313_G657:C749_13119
128413_G658:C747_13119
128613_G660:C745_13119
128713_G661:C744_13119
128813_G662:U743_13128
129013_G664:G741_1300
129113_G666:U740_13128
129213_G667:C739_13119
129313_G668:C738_13119
129513_G670:C736_13119
129613_G671:C735_13119
129813_G673:C717_13119
129913_G674:A716_1318
130713_G682:C708_13119
130813_G683:C707_13119
131013_G685:U705_1300
132113_G688:C699_13119
132313_G691:A696_131011
132513_G724:A665_1339
132613_G725:C732_13119
132813_G727:G730_1300
125013_G755:C586_13119
125313_G758:A583_131011
125513_G760:G581_1300
125613_G761:U580_13128
125813_G763:C578_13119
126013_G765:A816_1300
133113_G769:C810_13119
133313_G771:C808_13119
133513_G773:C806_13119
133613_G774:C805_13119
133713_G778:U804_13128
134413_G785:C797_13119
134513_G786:C796_13119
124113_G821:C879_13119
124313_G823:C877_13119
124513_G825:C875_13119
135113_G851:U835_13128
135213_G852:C834_13119
135313_G853:U833_13128
135413_G854:C832_13119
135513_G855:U831_13128
135813_G858:A828_13911
136013_G861:C868_13119
136213_G885:C912_13119
136313_G886:U911_13128
136413_G887:C910_13119
136513_G888:A909_131011
137013_G894:U905_13128
137113_G895:C904_13119
137413_G898:A901_131011
1913_G916:C19_13119
11013_G917:C18_13119
11513_G922:C1395_13119
11813_G925:U1391_13128
11913_G927:U1390_13128
12013_G928:C1389_13119
12113_G929:C1388_13119
12513_G933:C1384_13119
137513_G939:C1344_13119
137713_G941:C1342_13119
137813_G942:U1341_13128
138013_G944:A1339_131011
139613_G963:C972_13119
139813_G976:U1358_1300
141713_G987:C1218_13119
141813_G988:C1217_13119
143313_G1009:U1020_13128
143413_G1010:C1019_1310
143513_G1011:C1018_13119
143713_G1013:A1016_13100
143813_G1026:A1035_1300
142613_G1042:C998A_13119
144213_G1047:C1210_13119
144313_G1048:C1209_13119
144413_G1050:C1208_13119
144913_G1057:C1203_13119
145013_G1058:U1199_13128
145313_G1061:C1195_13119
145613_G1064:C1192_1300
145813_G1068:C1107_13119
146213_G1072:C1103_13119
146413_G1074:U1083_13128
146813_G1087:C1098_13119
146913_G1088:C1097_13119
147013_G1089:C1096_13119
147613_G1117:G1156_1300
147913_G1120:C1153_13119
148313_G1124:C1149_13119
148713_G1133:C1141_1310
148813_G1134:C1140_13119
149113_G1160:A1176_1300
149513_G1164:C1172_13119
149713_G1166:A1170_131011
149813_G1224:C1362A_13119
138713_G1231:U950_13128
138913_G1233:C948_13119
150113_G1241:C1296_13119
151113_G1253:C1284_13119
151313_G1255:C1282_13119
151413_G1258:C1277_13119
152013_G1265:C1270_13119
152213_G1304:A1333_131011
152313_G1305:A1332_13100
152613_G1309:C1328_13119
152713_G1310:C1327_13119
152813_G1311:C1326_1310
152913_G1312:C1325_13119
141313_G1361:A1319_13610
139913_G1365:A1357_1318
140213_G1368:C1354_13119
140413_G1370:C1352_13119
140513_G1371:U1351_13128
140713_G1373:A1349_13911
153213_G1454:C1449_13119
153313_G1455:C1448_13119
153613_G1461:C1440_13119
153713_G1462:C1439_13119
153913_G1464:C1437_13119
154213_G1467:A1434_13511
154413_G1469:C1431_13119
154513_G1470:C1430_13119
154613_G1471:C1429_13119
154913_G1474:C1426_13119
155013_G1475:U1425_13128
155113_G1476:C1424_13119
155513_G1480:C1420_13119
155713_G1482:A1418_131011
156113_G1486:U1414_13128
156213_G1487:A1413_1318
156313_G1488:C1412_13119
156413_G1489:C1411_13119
156613_G1491:C1409_13119
156713_G1494:5MC1407_13119
157013_G1497:5MC1404_13119
157413_G1504:C1399_13119
157513_G1505:A1502_1300
157713_G1508:C1527_13119
158013_G1511:C1524_13119
139713_M2G966:5MC1400_1300
122813_PSU516:A533_13423
1413_U24:A10_13120
13313_U30:A553_13120
13913_U37:A397_13221
14013_U49:U365_1340
14513_U56:A356_13120
15113_U62:G105_1310
16413_U82:A87_1310
18213_U114:A313_13120
19813_U125:G236_13128
110213_U129:G232_13128
110513_U133:U229_13116
112213_U191D:G186C_13128
112413_U191F:C186A_1300
112613_U192:A185_13120
114813_U249:G275_13128
114913_U252:A274_13120
115013_U253:A273_13120
115313_U256:A270_13120
115913_U294:A303_13120
116113_U296:G301_13128
17613_U340:A349_13120
116813_U387:G376_13128
118313_U405:A498_13323
118913_U427:G416_13128
119513_U434:A408_13120
119813_U437:A495_13424
122413_U512:A539_13120
124913_U571:A865_13120
126513_U636:A602_13120
127313_U646:G593_13128
128513_U659:A746_13120
129413_U669:A737_13120
129713_U672:G734_13128
130213_U677:G713_1310
130313_U678:A712_13120
131113_U686:A704_13424
125213_U757:G584_13128
133413_U772:A807_13120
134613_U788:A794_1300
124713_U820:A873_13323
135013_U850:G836_13128
136713_U891:A907_13424
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15991K_G52:C62_1K119
16001K_G53:C61_1K119
16021K_PSU55:G18_1K00
15971K_U50:A64_1K120
15981K_U51:G63_1K128
16312K_5MU54:A58_2K424
16252K_A7:U66_2K120
16372K_A14:4SU8_2K424
16452K_A31:PSU39_2K121
16202K_C2:G71_2K10
16212K_C3:G70_2K119
16222K_C4:G69_2K119
16342K_C11:G24_2K119
16362K_C13:G22_2K119
16262K_C49:G65_2K119
16502K_C74:G2265_1H119
16512K_C75:OMG2264_1H119
16192K_G1:C72_2K119
16232K_G5:C68_2K119
16242K_G6:C67_2K119
16332K_G10:C25_2K119
16382K_G15:C48_2K222
16402K_G19:C56_2K10
16412K_G27:C43_2K119
16422K_G28:C42_2K119
16432K_G29:C41_2K119
16442K_G30:C40_2K119
16292K_G52:C62_2K119
16302K_G53:C61_2K119
16392K_H2U16:U59_2K213
16462K_PSU32:A38_2K00
16322K_PSU55:G18_2K20
16352K_U12:A23_2K120
16272K_U50:A64_2K120
16282K_U51:G63_2K128
16563K_A7:U66_3K10
16623K_A21:U45_3K20
16593K_A23:U12_3K120
16613K_A26:G44_3K30
16653K_A31:PSU39_3K121
16663K_A36:U43_4K120
18923K_A76:C2407_1H50
16523K_C2:G71_3K10
16533K_C3:G70_3K119
16543K_C4:G69_3K119
16713K_C56:G2135_1H00
16553K_G6:C67_3K119
16583K_G22:C13_3K00
16603K_G24:C11_3K119
16633K_G29:C41_3K119
16643K_G30:C40_3K10
16683K_G52:C62_3K10
16693K_G53:C61_3K10
16573K_U8:A14_3K00
16673K_U51:G63_3K00
16703K_U55:A58_3K424
16474K_U46:A36_2K120
16484K_U47:A35_2K120
16494K_U48:G34_2K128
16785K_A7:U66_5K120
16845K_A14:4SU8_5K424
17075K_A31:PSU39_5K121
16885K_A58:5MU54_5K424
16735K_C2:G71_5K119
16745K_C3:G70_5K10
16755K_C4:G69_5K119
16825K_C11:A9_5K00
16835K_C13:G22_5K10
16795K_C49:G65_5K119
16925K_C56:G19_5K00
16895K_C61:G53_5K119
16905K_C62:G52_5K00
16725K_G1:C72_5K10
16765K_G5:C68_5K10
16775K_G6:C67_5K00
16815K_G10:C25_5K119
16855K_G15:C48_5K00
16875K_G18:PSU55_5K20
17045K_G28:C42_5K119
17055K_G29:C41_5K00
17065K_G30:C40_5K10
16915K_G63:U51_5K128
16865K_H2U16:U59_5K00
17085K_PSU32:A38_5K00
16805K_U45:A26_5K00

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)