A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: 6QWF  PDB ID: 6QWF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA4:DT27_D0.562-0.3160.284-0.591-7.639-5.141
18C_DA8:DT23_D0.049-0.1650.6311.33-12.4683.742
111C_DA11:DT20_D-0.084-0.3540.316-1.129-15.3711.593
112C_DA12:DT19_D0.8640.1230.1079.631-7.85710.032
114C_DA14:DT17_D-0.228-0.1260.313-2.482-17.9872.368
121C_DA21:DT10_D0.086-0.1380.091-5.188-12.999-0.1
122C_DA22:DT9_D0.249-0.2330.4386.073-13.848-0.499
125C_DA25:DT6_D0.743-0.311-0.078-2.792-12.846-4.609
128C_DA28:DT3_D0.061-0.0190.3325.551-13.5594.725
130C_DA30:DT1_D0.3450.10.37516.388-7.6126.141
17C_DC7:DG24_D0.243-0.0290.14-0.025-10.5672.509
113C_DC13:DG18_D1.289-0.021-0.37818.989-21.2277.442
123C_DC23:DG8_D0.267-0.0610.507-4.432-9.386-0.644
126C_DC26:DG5_D-0.090.3880.2543.641-13.2149.493
13C_DG3:DC28_D0.5710.1560.025-3.861-10.5297.209
15C_DG5:DC26_D-0.3850.1320.3410.326-9.3554.858
16C_DG6:DC25_D0.325-0.0610.0783.972-8.0510.146
118C_DG18:DC13_D-0.9130.0970.11-15.025-14.9610.172
124C_DG24:DC7_D0.2980.0160.1630.316-11.2812.118
127C_DG27:DC4_D0.506-0.190.5799.095-12.295-1.812
11C_DT1:DA30_D-0.046-0.0360.555-24.211-11.8883.801
12C_DT2:DA29_D-1.3210.1180.097-10.29-14.4354.176
19C_DT9:DA22_D0.153-0.2560.661-5.387-10.176-0.892
110C_DT10:DA21_D0.016-0.1640.4421.688-11.263-0.966
115C_DT15:DA16_D-0.444-0.130.614-1.431-17.105-0.157
116C_DT16:DA15_D-0.317-0.1680.622-1.496-20.6830.712
117C_DT17:DA14_D0.1470.0630.334-0.139-17.3993.99
119C_DT19:DA12_D-0.01-0.0640.376-12.728-14.3496.354
120C_DT20:DA11_D0.439-0.3050.245-1.254-12.543-0.516
129C_DT29:DA2_D-0.6160.1840.2152.278-13.6524.033

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.