A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2020 number of released structures: 10887
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NDB ID: 6R47  PDB ID: 6R47 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
110A_A38:U8_A0.291-0.231-0.088-4.48-16.9224.031
111A_A39:U7_A0.077-0.180.054-12.759-16.305-2.128
13A_C4:G15_A0.2170.13-0.0386.615-17.1032.82
14A_C5:G14_A0.196-0.0430.2060.644-5.8320.59
123A_C26:G65_B-0.23-0.1350.285-2.865-7.606-4.772
124A_C27:G64_B0.115-0.0930.0814.05-5.1641.154
125A_C28:G63_B0.52-0.1060.12311.035-12.5042.571
16A_C34:G12_A0.438-0.005-0.4521.401-24.9757.766
17A_C35:G11_A0.322-0.2270.459-2.359-7.2711.076
112A_C41:A33_A0.085-0.0710.237-0.574-2.7582.936
117A_C46:G57_B-0.164-0.352-0.0852.716-5.073-0.449
121A_C50:G53_B0.2160.2160.087.063-10.0896.836
122A_C51:G52_B0.0750.014-0.53313.071-13.3484.928
18A_CBV36:G10_A-0.115-0.072-0.2517.338-13.9654.071
11A_G2:C17_A0.069-0.276-0.197-5.7480.701-10.79
12A_G3:C16_A-0.573-0.1880.280.808-14.9543.079
15A_G6:C13_A-0.07-0.0040.18114.206-2.2231.55
19A_G37:C9_A-0.357-0.347-0.173-0.861-6.871-1.842
113A_G42:G61_B-7.192-2.23-0.7415.493-5.353-9.032
115A_G44:C59_B-0.417-0.052-0.034-0.624-6.5674.208
116A_G45:C58_B-0.555-0.372-0.468-9.217-12.9862.012
118A_G47:C56_B-0.409-0.267-0.074-12.179-18.7583.628
126A_U29:U62_B2.45-1.8790.82220.305-14.5268.222
114A_U43:G60_B-3.5540.81-0.73513.328-12.20810.126
119A_U48:A55_B0.176-0.040.319-18.261-22.5655.144
120A_U49:A54_B-0.4170.060.619-13.915-9.921-0.939

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.