A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
Search for released structures

NDB ID: 6R47  PDB ID: 6R47 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
110AA_A38A39:U7U8_AA0.631-2.0553.4163.8077.13529.359-5.321-0.4532.90413.752-7.33830.428
111AA_A39C41:A33U7_AA-0.829-2.8372.7533.567.56761.439-3.0320.9352.3777.369-3.46761.951
13AA_C4C5:G14G15_AA-0.264-2.0183.354-1.7318.07429.444-5.3470.1752.72815.5053.32430.555
14AA_C5G6:C13G14_AA-0.619-1.9672.8272.07810.33726.835-5.6881.5941.90121.261-4.27528.797
122AA_C26C27:G64G65_BB-0.446-1.5293.015-2.2472.26932.997-3.0280.4372.9293.9843.94433.147
123AA_C27C28:G63G64_BB0.19-1.4613.172-0.9631.44233.081-2.795-0.4893.1012.531.6933.125
124AA_C28U29:U62G63_BB0.484-1.4022.962-7.918-2.83139.787-1.734-1.4952.907-4.10511.4840.63
16AA_C34C35:G11G12_AA-0.696-2.1383.789-9.75316.30232.68-5.53-0.252.57726.3815.78237.669
17AA_C35CBV36:G10G11_AA-0.453-1.6842.9515.848.35627.734-4.7581.9042.22116.733-11.69529.514
112AA_C41G42:G61A33_BA3.9870.4473.678-3.1060.24343.5490.576-5.6843.4020.3274.1843.655
117AA_C46G47:C56G57_BB0.781-2.0853.5843.13312.16427.784-6.357-0.8732.5423.847-6.14230.441
121AA_C50C51:G52G53_BB-0.306-1.8223.0135.2776.73929.006-4.6611.4992.44513.099-10.25830.217
18AA_CBV36G37:C9G10_AA-0.322-1.4013.126-4.07325.63231.876-4.3330.0911.63439.5076.27740.892
11AA_G2G3:C16C17_AA0.908-1.8383.034-3.3578.53831.985-4.417-2.062.37315.115.94133.242
12AA_G3C4:G15C16_AA0.06-0.9963.261.362-1.02235.743-1.4740.0983.286-1.664-2.21735.782
15AA_G6C34:G12C13_AA-1.479-0.3953.0445.5292.01249.54-0.6012.1192.8572.392-6.57149.866
19AA_G37A38:U8C9_AA0.718-1.1973.2510.97316.72937.325-3.426-0.9312.52824.674-1.43540.792
113AA_G42U43:G60G61_BB0.674-0.9293.181-4.3592.17439.85-1.59-1.4573.043.1766.36740.135
115AA_G44G45:C58C59_BB0.113-2.0623.6241.8474.86430.01-4.9550.1753.2589.304-3.53430.448
116AA_G45C46:G57C58_BB-0.317-1.4663.067-3.9581.3633.515-2.729-0.0533.0232.3476.83133.768
118AA_G47U48:A55C56_BB-0.022-1.2093.256-1.8419.74137.185-2.99-0.1842.85914.9522.82738.439
114AA_U43G44:C59G60_BB0.108-1.5633.963-6.74212.73737.755-3.905-1.0233.22818.8649.98640.318
119AA_U48U49:A54A55_BB-0.155-1.2493.009-4.2796.06429.666-3.435-0.4572.70211.6158.19730.56
120AA_U49C50:G53A54_BB0.903-2.0072.6514.617-0.09429.717-3.854-0.9522.762-0.181-8.93530.066

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.