A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6RIO  PDB ID: 6RIO 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12AA_DA3DT4:DA21DT22_BB-1.127-0.4183.205-3.2824.98324.372-2.4211.6343.17911.5837.62925.081
16AA_DA7DC8:DG17DT18_BB0.735-0.2053.0650.3971.38429.625-0.673-1.3573.0612.704-0.77729.659
18AA_DA9DT10:DA15DT16_BB-0.202-0.5393.0921.7415.9825.178-2.730.8962.86813.458-3.91825.925
17AA_DC8DA9:DT16DG17_BB1.7980.433.5410.1713.40140.054-0.952-1.2723.81818.603-14.11843.31
11AA_DG2DA3:DT22DC23_BB-1.515-0.3314.5089.025-1.90742.961-0.2023.1714.134-2.569-12.15643.895
14AA_DG5DT6:DA19DC20_BB-1.147-0.562.9241.9933.23829.135-1.7122.6362.7646.403-3.9429.377
13AA_DT4DG5:DC20DA21_BB-1.334-0.1173.604-13.93518.56936.867-2.2850.2093.45126.40219.81243.352
15AA_DT6DA7:DT18DA19_BB-0.1910.3563.3370.49810.93731.933-1.2360.4143.27619.188-0.87433.711
19AA_DT10DC11:DG14DA15_BB0.8440.0543.5165.7249.41738.008-1.136-0.513.51714.1-8.57139.517

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.