A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: 6S16  PDB ID: 6S16 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA2DA3:DT31DT32_FF-0.082-0.1023.6740.011-3.97232.1640.6040.1493.66-7.135-0.01932.401
13CC_DA3DT4:DA30DT31_FF-0.2710.0413.6034.0121.66742.401-0.1280.8173.5642.297-5.5342.613
112CC_DA13DC14:DG20DT21_CC0.688-0.7722.98-2.7432.84328.114-2.158-1.9652.8115.8175.61228.384
119CC_DA30DG31:DC3DT4_DD0.307-0.1673.4-0.4062.00531.421-0.696-0.6453.3793.6970.74831.485
11CC_DC1DA2:DT32DG33_FF-0.8330.7572.915-4.2142.74237.5460.8450.793.0344.2376.51237.869
15CC_DC5DG6:DC28DG29_FF-0.6270.7663.0790.7856.87525.401-0.1081.5823.15315.276-1.74426.312
18CC_DC8DT9:DA25DG26_FF0.8060.2743.1939.30719.61126.11-2.860.1972.85336.43-17.2933.834
113CC_DC14DC15:DG19DG20_CC1.0670.0523.6715.9065.44833.917-0.868-0.7483.7629.179-9.95134.829
115CC_DC26DG27:DC7DG8_DD-0.5280.8563.298-0.072-4.99536.4552.030.8273.159-7.9390.11436.784
118CC_DC29DA30:DT4DG5_DD-0.3750.2413.587-2.9315.74836.958-0.4580.1583.6028.9834.5837.498
16CC_DG6DG7:DC27DC28_FF-0.2260.0013.171.736.52732.584-1.0530.6753.09611.48-3.04233.258
17CC_DG7DC8:DG26DC27_FF0.555-0.2283.3576.557-2.2333.412-0.0190.1423.41-3.828-11.25534.102
111CC_DG12DA13:DT21DC22_CC-0.510.1353.317-2.5564.29637.09-0.3670.4523.3386.7163.99637.414
116CC_DG27DG28:DC6DC7_DD-0.8550.283.386-1.9366.27137.83-0.3961.0473.4259.5852.95838.374
117CC_DG28DC29:DG5DC6_DD0.936-0.1532.8840.7156.09924.595-1.904-1.9512.79114.041-1.64625.338
120CC_DG31DA32:DT2DC3_DD-0.324-0.3453.3521.3790.63935.996-0.6510.7243.3321.034-2.23136.027
14CC_DT4DC5:DG29DA30_FF0.680.483.822-1.0990.50240.0950.633-1.1383.8080.7321.60340.113
19CC_DT10DT11:DA23DA24_CC-0.044-0.5652.9416.0065.31529.249-2.0291.1542.73510.284-11.62130.306
110CC_DT11DG12:DC22DA23_CC0.2560.0923.2756.151.82631.164-0.170.6693.2643.355-11.29731.801
114CC_DT25DC26:DG8DA9_DD-0.0120.4943.7190.00520.78231.232-2.4990.023.39334.263-0.00737.37
121DD_DT10DT11:DA23DA24_FF-1.2590.5083.208-6.9644.74341.2610.2061.0183.4026.6479.7642.076
122DD_DT11DC12:DG22DA23_FF-0.4060.773.8658.58-3.23347.5381.2331.2723.686-3.968-10.52948.364

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.