A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Nov-2020 number of released structures: 11059
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NDB ID: 6TB7  PDB ID: 6TB7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A7:U46_A0.06-0.0450.6016.652-4.483-1.824
110A_A18:U43_A0.073-0.0990.016-4.52-3.7730.404
13A_C3:G50_A0.171-0.0450.0430.457-9.8183.112
16A_C6:G47_A0.144-0.1330.2147.544-19.4722.469
121A_C13:G38_A0.174-0.210.1098.649-6.106-0.413
122A_C14:G36_A0.206-0.1720.1740.564-1.973-0.146
118A_C26:G33_A0.237-0.1090.2051.419-8.710.987
119A_C27:G32_A0.195-0.0730.1860.6653.6542.119
11A_G1:C52_A-0.202-0.143-0.286-12.21-5.8441.092
12A_G2:C51_A-0.225-0.152-0.325-4.08-5.2952.399
18A_G16:C45_A-0.226-0.3160.014-8.649-12.436-0.275
111A_G19:C42_A-0.176-0.0950.087-2.269-7.0472.721
112A_G20:U41_A-2.107-0.5960.2674.947-5.264-1.577
115A_G23:C37_A-0.28-0.1870.0381.787-9.18-1.384
116A_G24:A35_A-0.5191.469-0.0366.031-2.556-27.777
117A_G25:C34_A-0.109-0.1520.70512.545-8.499-0.933
120A_G28:A31_A7.063-4.9681.02418.5186.214-9.921
14A_U4:A49_A-0.089-0.2030.2270.213-10.2532.967
15A_U5:G48_A1.92-0.6060.6962.204-8.523-0.958
19A_U17:A44_A-0.26-0.1710.174-8.434-5.019-0.937
113A_U21:A40_A-0.056-0.0650.158-0.477-7.9392.052
114A_U22:A39_A-0.011-0.2790.622-2.346-3.9331.884

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.