A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
Search for released structures

NDB ID: 6U79  PDB ID: 6U79 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19A_A9:U29_A-0.046-0.1590.35817.015-47.181-24.254
112A_A12:U25_A0.657-0.046-0.2039.319-8.0696.794
115A_A15:U21_A0.592-0.19-0.145-3.9110.66-3.77
16A_C6:G32_A-0.4210.032-0.4027.656-0.9213.748
111A_C11:G26_A-0.0460.173-0.42110.7876.789-3.057
113A_C13:G23_A0.1430.074-0.1422.952-12.704-0.284
11A_G1:C37_A-0.40.0770.0543.201-5.098-0.844
12A_G2:C36_A-0.042-0.1490.198-0.347-15.6572.267
110A_G10:C28_A0.677-0.3550.78-14.931-25.491-7.999
114A_G14:C22_A0.192-0.011-0.22-6.068-11.1472.844
13A_U3:A35_A0.404-0.1650.093-0.557-12.6475.565
14A_U4:A34_A0.169-0.1150.038-0.768-8.4717.359
15A_U5:A33_A0.775-0.287-0.0693.087-8.4349.265
17A_U7:A31_A0.553-0.179-0.191-6.061-7.84911.994
18A_U8:A30_A-0.2250.008-0.67912.56524.827-15.475

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.