A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6U79  PDB ID: 6U79 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19AA_A9G10:C28U29_AA0.752-1.3734.194-0.70712.95945.495-3.014-1.013.68216.3670.89347.216
112AA_A12C13:G23U25_AA1.918-1.664.286-11.74711.15352.216-2.628-2.9543.4212.33912.99554.502
16AA_C6U7:A31G32_AA0.582-1.8093.529-1.16516.54235.66-4.602-1.0022.46525.3891.78939.213
111AA_C11A12:U25G26_AA0.328-1.8233.446-0.6999.39530.469-4.986-0.7212.76817.3621.29131.859
113AA_C13G14:C22G23_AA0.128-1.643.4851.1256.62933.294-3.891-0.0363.11311.425-1.93933.948
11AA_G1G2:C36C37_AA0.126-1.7123.365-1.0046.52432.331-4.1-0.3882.96711.5651.7832.98
12AA_G2U3:A35C36_AA0.238-1.4883.2580.7014.12833.549-3.205-0.2993.0627.117-1.20833.802
110AA_G10C11:G26C28_AA1.295-1.8264.561-22.6472.49639.279-2.664-4.3023.2713.38930.75645.182
114AA_G14A15:U21C22_AA-0.258-1.5363.211-0.48.91431.887-4.0850.3912.69815.8410.71133.081
13AA_U3U4:A34A35_AA0.097-1.5913.2410.2055.11429.934-4.015-0.1462.9359.811-0.39230.358
14AA_U4U5:A33A34_AA0.19-1.4483.1291.1983.15131.957-3.144-0.1422.9815.703-2.16832.129
15AA_U5C6:G32A33_AA0.081-1.5323.2455.78417.36521.039-6.6750.9931.53639.302-13.09127.818
17AA_U7U8:A30A31_AA-1.402-1.2412.9346.1518.85421.427-5.4073.7481.08341.108-13.40829.117
18AA_U8A9:U29A30_AA0.286-1.5393.7352.209-7.51826.368-1.0020.0554.022-16.036-4.71127.488

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.