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As of 23-Sep-2020 number of released structures: 10967
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NDB ID: 6UBU  PDB ID: 6UBU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_A17:U79_B0.138-0.067-0.112-1.51-14.0281.141
15B_A19:U77_B-0.013-0.1180.181-3.086-9.9356.618
17B_A21:U75_B0.078-0.1130.201-2.158-15.4761.116
118B_A33:A66_B4.0891.527-0.037-11.388-4.476-112.42
120B_A35:A64_B-4.2061.3620.391-0.1073.399-110.635
116B_A40:U30_B0.059-0.1650.021-4.377-5.9512.991
112B_A44:C26_B2.2990.0750.1762.478-10.61117.326
111B_A45:U25_B0.142-0.1330.143-1.302-11.3923.68
14B_C18:G78_B-0.332-0.2080.0532.004-16.4471.46
117B_C39:G31_B0.216-0.1860.094-6.157-5.7831.189
115B_C41:G29_B0.286-0.179-0.025-0.492-13.3120.351
113B_C43:G27_B0.257-0.258-0.0168.913-7.432-0.128
126B_C70:G56_B0.39-0.1980.158-3.704-12.915-1.753
127B_C71:G55_B0.078-0.1510.1366.382-10.936-1.74
11B_G15:C81_B-0.471-0.3230.065-1.084-5.548-11.096
12B_G16:C80_B0.288-0.111-0.099-2.028-14.5141.26
121B_G37:C61_B-0.136-0.2220.6244.008-8.796-3.888
122B_G38:C60_B-0.054-0.0370.49920.61-11.086-0.325
114B_G42:C28_B0.042-0.1770.02-4.669-7.62-0.399
110B_G46:C53_B-0.256-0.083-0.343-20.131-1.54-1.425
124B_G68:C58_B-0.151-0.1740.136-4.46-14.825-0.019
128B_G72:C54_B-0.221-0.2360.1753.681-16.1270.659
16B_U20:A76_B0.08-0.1480.147-10.758-17.2826.545
19B_U22:A52_B-0.055-0.117-0.42714.986-2.4411.743
119B_U34:A65_B4.111-1.91-0.321-3.515-2.061-101.009
18B_U47:U51_B3.478-0.5180.46133.39636.303-74.644
123B_U67:A59_B-0.05-0.0970.0496.798-11.213-2.147
125B_U69:G57_B2.31-0.7120.095-3.019-13.36-1.821

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.