A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: 6UKE  PDB ID: 6UKE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA4:5IU10_B-0.131-0.0820.001-1.16-13.078-1.677
15A_DA5:DT9_B0.222-0.1930.4817.265-16.1182.232
110A_DA10:DT4_B0.081-0.0490.12318.521-9.94-3.663
111A_DA11:5IU3_B0.079-0.10.35713.121-17.010.066
12A_DC2:DG12_B0.244-0.1360.085-10.823-7.9941.922
13A_DC3:DG11_B0.647-0.3660.06-5.952-4.289-2.649
17A_DC7:DG7_B0.335-0.187-0.1430.67-1.586-2.372
19A_DC9:DG5_B0.389-0.251-0.456-14.39834.426-0.592
112A_DC12:DG2_B0.369-0.1860.17.267-14.1262.095
16A_DG6:DC8_B-0.146-0.0220.3788.243-11.5890.701
18A_DG8:DC6_B-0.36-0.011-0.3-31.884-24.6552.652
113A_DG13:DC1_B-0.542-0.0790.383-5.881-8.8543.917
11A_DT1:DA13_B0.2220.0670.422-14.574-5.894-0.666

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.