A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Feb-2020 number of released structures: 10626
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NDB ID: 6UKI  PDB ID: 6UKI 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11AA_DC1DT2:DA13DG14_BB-0.683-0.7583.4640.9887.99933.417-2.5741.3153.18213.666-1.68934.348
17AA_DC7DG8:DC7DG8_BB0.569-0.3363.927-0.97410.27140.437-1.76-0.9223.72314.5751.38241.679
19AA_DC9DT10:DA5DG6_BB2.493-0.6854.51216.736-21.9947.0438.1622.2073.116-60.463-46.0128.504
13AA_DG3DT4:DA11DC12_BB-0.689-0.833.28-5.2171.9730.549-1.9340.2733.2913.79.79831.042
16AA_DG6DC7:DG8DC9_BB-0.583-0.5453.4443.867-0.33236.288-0.8231.4893.371-0.532-6.18836.488
18AA_DG8DC9:DG6DC7_BB1.0390.2113.685-2.683-10.81836.9711.803-1.9413.412-16.6024.11838.558
112AA_DG12DG13:DC2DC3_BB0.0090.2833.5831.5310.92635.5460.3160.233.5861.515-2.50535.589
113AA_DG13DA14:DT1DC2_BB-0.3260.1393.456-0.213.16538.44-0.2030.4663.4584.7970.31838.566
12AA_DT2DG3:DC12DA13_BB0.098-0.0533.3472.4646.01435.424-0.9610.23.2949.782-4.00835.997
14AA_DT4DT5:DA10DA11_BB0.288-0.5723.1752.51-3.39632.69-0.441-0.0883.229-6.002-4.43732.954
15AA_DT5DG6:DC9DA10_BB0.6040.1973.112-4.1137.84836.551-0.665-1.4463.00612.2926.44237.574
110AA_DT10DT11:DA4DA5_BB0.206-0.4073.274-3.9272.55133.057-1.129-1.0063.194.4556.85833.378
111AA_DT11DG12:DC3DA4_BB0.6770.5953.3960.9871.71641.1850.651-0.8513.4322.437-1.40341.23
114DD_DC1DT2:DA13DG14_EE-0.417-0.1563.4164.627-2.9839.4560.1291.1683.35-4.388-6.81239.823
120DD_DC7DG8:DC7DG8_EE0.498-0.2593.746-0.0578.21540.421-1.378-0.7153.62711.7430.08141.213
122DD_DC9DT10:DA5DG6_EE2.692-0.5764.73113.809-19.0717.09910.0211.9113.333-59.497-43.08124.578
116DD_DG3DT4:DA11DC12_EE-0.919-0.4873.408-5.9820.37433.071-0.9070.5463.510.6510.40333.595
119DD_DG6DC7:DG8DC9_EE-0.537-0.4243.469-0.5881.02137.551-0.7990.7533.4641.5850.91337.569
121DD_DG8DC9:DG6DC7_EE0.9610.2893.417-0.016-10.77435.711.931-1.5063.199-17.0960.02537.249
125DD_DG12DG13:DC2DC3_EE0.0250.6613.5421.8281.81934.650.8040.2633.5683.048-3.06534.742
126DD_DG13DA14:DT1DC2_EE0.4530.2663.031-4.483-1.35635.170.619-1.3462.941-2.2317.37835.47
115DD_DT2DG3:DC12DA13_EE0.4270.2763.4061.9081.05738.3890.282-0.43.4291.606-2.89838.448
117DD_DT4DT5:DA10DA11_EE0.278-0.4063.1284.775-4.83935.0660.0170.2183.164-7.939-7.83435.699
118DD_DT5DG6:DC9DA10_EE0.4890.5893.186-4.5536.73935.090.012-1.4283.15610.9957.4335.991
123DD_DT10DT11:DA4DA5_EE-0.112-0.3563.341-0.8742.22733.92-0.9710.053.3133.8111.49634.002
124DD_DT11DG12:DC3DA4_EE0.2771.2323.3140.587-0.61942.6081.758-0.3213.3-0.851-0.80842.616

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.