A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6VA2  PDB ID: 6VA2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_C1:G21_B0.459-0.091-0.13-1.152-4.4630.068
12A_C2:G20_B0.249-0.08-0.1023.793-11.615-0.739
15A_C5:G17_B0.431-0.10.0872.074-19.960.846
13A_G3:C19_B-0.355-0.041-0.444-16.83-20.0733.746
14A_G4:U18_B-2.376-0.3440.21-6.837-13.7622.015
16A_G7:C16_B-0.582-0.162-0.549-7.5837.166-0.708
18A_G9:C14_B-0.487-0.117-0.052-5.777-19.5891.637
110A_G11:C12_B-0.334-0.080.119-9.032-15.701-1.501
17A_U8:A15_B-0.1480.018-0.073-3.608-2.835-0.757
19A_U10:A13_B-0.121-0.025-0.098-4.429-18.994-0.891

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.