A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6VCS  PDB ID: 6VCS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_DA7:DT6_D-0.414-0.2650.1797.224-5.8646.195
18C_DA9:DT4_D0.004-0.1130.068-0.292-2.2120.907
11C_DC2:DG11_D0.263-0.211-0.3814.744-20.2732.233
12C_DC3:DG10_D0.199-0.1560.436-12.047-12.8795.725
17C_DC8:DG5_D0.124-0.0610.1315.58-17.1334.388
14C_DG5:DC8_D0.072-0.3540.301-13.406-13.7540.308
19C_DG10:DC3_D-0.293-0.230.24213.137-10.3625.061
110C_DG11:DC2_D-0.141-0.292-0.417-4.331-16.9470.476
13C_DT4:DA9_D0.223-0.240.224-4.583-4.4731.745
15C_DT6:DA7_D0.486-0.4130.189-0.902-5.4285.243

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.