A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: 6VCS  PDB ID: 6VCS 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16CC_DA7DC8:DG5DT6_DD-0.566-0.6543.141-1.3173.46435.391-1.5520.7433.0835.6782.15935.579
18CC_DA9DG10:DC3DT4_DD0.624-0.0423.063-2.39910.53724.953-2.55-1.892.74823.0545.24927.158
11CC_DC2DC3:DG10DG11_DD0.376-0.7683.632-1.05113.53838.464-2.714-0.6663.18519.8121.53840.705
12CC_DC3DT4:DA9DG10_DD-0.712-0.1743.2282.03610.16428.722-2.31.7482.94119.696-3.94630.499
17CC_DC8DA9:DT4DG5_DD-0.807-0.383.63-2.5755.80837.226-1.420.8793.5799.0173.99937.745
14CC_DG5DT6:DA7DC8_DD0.551-0.7873.1152.661.42134.127-1.55-0.5373.1142.416-4.52134.256
19CC_DG10DG11:DC2DC3_DD-0.343-0.7643.668-0.35614.1439.541-2.6730.4393.22520.1360.50741.899
13CC_DT4DG5:DC8DA9_DD0.759-0.7333.342.2115.5833.402-2.162-0.9423.2219.611-3.80833.921
15CC_DT6DA7:DT6DA7_DD0.076-0.982.930.1410.59625.804-4.164-0.132.35222.554-0.29827.861

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.