A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
Search for released structures

NDB ID: 6VF5  PDB ID: 6VF5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16T_DA7:DT3_P0.1-0.1450.3097.67-13.9150.442
11T_DC1:DG4_D-0.281-0.1690.422-12.477-12.836-3.337
14T_DC4:DG1_D0.284-0.115-0.20612.26-0.727-0.41
17T_DC8:DG2_P0.33-0.143-0.09210.973-9.893-0.032
12T_DG2:DC3_D-0.044-0.0460.2771.704-10.5793.457
13T_DG3:DC2_D-0.166-0.1540.157-0.925-8.475-1.999
18T_DG9:DC1_P-0.186-0.1290.09-2.938-9.036-1.153
15T_DT6:DA4_P0.012-0.14-0.0934.0970.7961.49

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.