6VGD: Base Pair Morphology Parameters

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As of 24-May-2023 number of released structures: 12803

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NDB ID: 6VGD PDB ID: 6VGD

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	B_DA2:DT16_C	-0.286	-0.223	-0.218	-12.643	-35.619	-1.326
1	4	B_DA4:DT14_C	0.012	-0.215	0.305	13.079	-23.418	-7.226
1	1	B_DC1:DG17_C	0.585	-0.44	-0.907	27.261	-14.893	-13.079
1	12	B_DC13:DG5_C	2.349	-0.204	-0.791	3.851	-19.875	3.31
1	15	B_DC16:DG2_C	0.149	-0.143	-0.46	-20.355	-12.088	17.584
1	3	B_DG3:DC15_C	-1.609	-0.26	0.225	-8.678	-14.823	2.417
1	5	B_DG5:DC13_C	0.211	0.128	-0.39	3.014	-14.718	-2.547
1	6	B_DG6:DC12_C	-0.205	-0.555	-0.401	14.078	-10.381	-2.858
1	8	B_DG9:DC9_C	0.204	0.461	-0.845	-1.691	-6.068	0.965
1	10	B_DG11:DC7_C	-0.846	-0.922	-0.485	12.486	-15.458	0.406
1	11	B_DG12:DC6_C	1.13	-0.255	-0.678	2.767	-6.978	-2.653
1	7	B_DT8:DA10_C	-0.236	0.065	-0.461	29.15	-19.514	8.306
1	9	B_DT10:DA8_C	0.44	0.412	-0.988	21.671	-8.279	3.561
1	13	B_DT14:DA4_C	-1.589	0.169	1.086	-9.207	-25.595	-5.233
1	14	B_DT15:DA3_C	-0.295	0.163	0.212	-30.941	-24.593	1.462

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.