A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6VGD  PDB ID: 6VGD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA2:DT16_C-0.286-0.223-0.218-12.643-35.619-1.326
14B_DA4:DT14_C0.012-0.2150.30513.079-23.418-7.226
11B_DC1:DG17_C0.585-0.44-0.90727.261-14.893-13.079
112B_DC13:DG5_C2.349-0.204-0.7913.851-19.8753.31
115B_DC16:DG2_C0.149-0.143-0.46-20.355-12.08817.584
13B_DG3:DC15_C-1.609-0.260.225-8.678-14.8232.417
15B_DG5:DC13_C0.2110.128-0.393.014-14.718-2.547
16B_DG6:DC12_C-0.205-0.555-0.40114.078-10.381-2.858
18B_DG9:DC9_C0.2040.461-0.845-1.691-6.0680.965
110B_DG11:DC7_C-0.846-0.922-0.48512.486-15.4580.406
111B_DG12:DC6_C1.13-0.255-0.6782.767-6.978-2.653
17B_DT8:DA10_C-0.2360.065-0.46129.15-19.5148.306
19B_DT10:DA8_C0.440.412-0.98821.671-8.2793.561
113B_DT14:DA4_C-1.5890.1691.086-9.207-25.595-5.233
114B_DT15:DA3_C-0.2950.1630.212-30.941-24.5931.462

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.