A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6VGD  PDB ID: 6VGD 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12BB_DA2DG3:DC15DT16_CC0.520.252.91-7.0817.63224.614-1.212-2.7542.62216.96515.74126.694
14BB_DA4DG5:DC13DT14_CC0.796-1.4463.6192.3613.55228.399-5.25-1.0172.7225.797-4.49231.493
11BB_DC1DA2:DT16DG17_CC0.5670.8624.4644.7598.94336.787-0.275-0.0194.57813.851-7.37138.11
112BB_DC13DT14:DA4DG5_CC-0.798-0.923.387-7.50213.40320.61-5.857-0.3212.48432.29418.07625.654
13BB_DG3DA4:DT14DC15_CC-0.960.4472.980.6380.71841.5590.561.4152.9721.011-0.941.569
15BB_DG5DG6:DC12DC13_CC-1.1260.7922.808-5.7166.66234.0660.4061.0883.04811.1449.56135.146
16BB_DG6DT8:DA10DC12_CC-0.351-0.9315.9883.41413.75552.701-2.5220.7575.57215.185-3.76954.441
18BB_DG9DT10:DA8DC9_CC-0.498-0.9682.587-0.8743.54332.566-2.1910.7662.4836.2941.55232.765
110BB_DG11DG12:DC6DC7_CC-0.9250.1273.741-7.398-1.84646.5710.3350.4513.83-2.3179.28447.157
111BB_DG12DC13:DG5DC6_CC-0.236-0.4883.2574.645-6.30236.8840.0650.973.242-9.825-7.24137.677
17BB_DT8DG9:DC9DA10_CC-0.2570.2154.102-2.4496.70844.828-0.470.0594.18.733.18845.364
19BB_DT10DG11:DC7DA8_CC-0.8450.5923.788-11.25513.35123.196-2.558-1.4673.63928.57724.09128.963
113BB_DT14DT15:DA3DA4_CC-0.183-0.3693.7954.8473.04743.361-0.8310.7813.7224.102-6.52643.719
114BB_DT15DC16:DG2DA3_CC1.1642.1183.0191.018-12.13641.6713.862-1.4922.367-16.636-1.39543.338

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.