6VGD: Base Pair Morphology Step Parameters

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NDB ID: 6VGD PDB ID: 6VGD

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	BB_DA2DG3:DC15DT16_CC	0.52	0.25	2.91	-7.081	7.632	24.614	-1.212	-2.754	2.622	16.965	15.741	26.694
1	4	BB_DA4DG5:DC13DT14_CC	0.796	-1.446	3.619	2.36	13.552	28.399	-5.25	-1.017	2.72	25.797	-4.492	31.493
1	1	BB_DC1DA2:DT16DG17_CC	0.567	0.862	4.464	4.759	8.943	36.787	-0.275	-0.019	4.578	13.851	-7.371	38.11
1	12	BB_DC13DT14:DA4DG5_CC	-0.798	-0.92	3.387	-7.502	13.403	20.61	-5.857	-0.321	2.484	32.294	18.076	25.654
1	3	BB_DG3DA4:DT14DC15_CC	-0.96	0.447	2.98	0.638	0.718	41.559	0.56	1.415	2.972	1.011	-0.9	41.569
1	5	BB_DG5DG6:DC12DC13_CC	-1.126	0.792	2.808	-5.716	6.662	34.066	0.406	1.088	3.048	11.144	9.561	35.146
1	6	BB_DG6DT8:DA10DC12_CC	-0.351	-0.931	5.988	3.414	13.755	52.701	-2.522	0.757	5.572	15.185	-3.769	54.441
1	8	BB_DG9DT10:DA8DC9_CC	-0.498	-0.968	2.587	-0.874	3.543	32.566	-2.191	0.766	2.483	6.294	1.552	32.765
1	10	BB_DG11DG12:DC6DC7_CC	-0.925	0.127	3.741	-7.398	-1.846	46.571	0.335	0.451	3.83	-2.317	9.284	47.157
1	11	BB_DG12DC13:DG5DC6_CC	-0.236	-0.488	3.257	4.645	-6.302	36.884	0.065	0.97	3.242	-9.825	-7.241	37.677
1	7	BB_DT8DG9:DC9DA10_CC	-0.257	0.215	4.102	-2.449	6.708	44.828	-0.47	0.059	4.1	8.73	3.188	45.364
1	9	BB_DT10DG11:DC7DA8_CC	-0.845	0.592	3.788	-11.255	13.351	23.196	-2.558	-1.467	3.639	28.577	24.091	28.963
1	13	BB_DT14DT15:DA3DA4_CC	-0.183	-0.369	3.795	4.847	3.047	43.361	-0.831	0.781	3.722	4.102	-6.526	43.719
1	14	BB_DT15DC16:DG2DA3_CC	1.164	2.118	3.019	1.018	-12.136	41.671	3.862	-1.492	2.367	-16.636	-1.395	43.338

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.