A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6VMY  PDB ID: 6VMY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A206:U319_A0.4450.373-0.28-8.77-12.38-13.511
16A_A207:U318_A0.2920.185-0.0610.904-4.963-7.952
17A_A208:U317_A0.034-0.0490.105-1.743-15.814-3.004
19A_A210:U315_A0.1750.101-0.201-4.643-11.667-5.588
117A_A228:G224_A-6.64-3.91.284-35.6877.572-0.124
118A_A229:U223_A0.1730.078-0.029-6.524-0.469-4.527
121A_A231:C220_A-3.098-0.266-0.33413.492-4.895-76.92
113A_A243:U311_A0.6660.086-0.701-16.038-9.67-4.451
133A_A249:U264_A0.5330.388-0.02-2.748-12.07921.18
139A_A255:A282_A-1.823-0.887-1.007-7.475-36.546159.467
140A_A276:A306_A-2.7311.406-0.07213.27-6.3264.227
14A_C205:G320_A0.144-0.0840.0913.333-4.315-1.214
119A_C230:G222_A0.188-0.05-0.23217.997-10.011-1.05
123A_C233:G218_A0.165-0.092-0.0091.194-8.73-0.932
124A_C234:G217_A0.169-0.093-0.0631.39-9.364-0.691
127A_C237:G214_A0.149-0.0860.0670.218-5.107-1.122
134A_C250:G263_A0.194-0.088-0.0619.962-13.188-1.025
135A_C251:G262_A0.164-0.092-0.0620.803-9.378-0.698
129A_C274:G268_A0.138-0.092-0.229-7.9735.028-1.37
130A_C275:G267_A0.163-0.085-0.2074.151-6.779-0.49
141A_C277:G304_A0.16-0.1440.459-2.217-13.519-2.775
149A_C287:G293_A0.155-0.08-0.0474.802-6.304-0.992
150A_C288:G291_A1.1441.706-1.0324.426-32.206-88.521
132A_C301:G265_A0.155-0.098-0.2850.363-4.667-0.499
152A_C326:G348_A0.147-0.0850.0550.5-6.644-1.175
153A_C328:U347_A1.569-0.8730.27329.962-32.019-25.743
156A_C334:G341_A0.31.704-0.5661.135-8.896-118.805
12A_G203:U322_A-2.818-0.797-0.1661.727-1.916-8.626
110A_G211:C314_A-0.163-0.0960.09-2.253-10.255-1.206
111A_G212:C313_A-0.192-0.097-0.037-6.271-12.627-0.892
122A_G232:U219_A-2.691-0.721-0.165-2.156-6.718-3.246
125A_G235:C216_A-0.153-0.083-0.062-3.015-6.57-0.969
126A_G236:C215_A-0.16-0.0950.116-1.499-9.138-1.355
114A_G244:C310_A-0.173-0.083-0.039-9.096-9.33-1.131
115A_G245:C309_A-0.168-0.0840.05-8.997-10.629-1.224
116A_G246:A308_A0.0141.514-0.2179.072-11.661-18.213
136A_G252:C261_A-0.177-0.0960.088-8.925-12.179-1.577
137A_G253:C260_A-0.122-0.1290.5516.681-9.278-2.671
143A_G279:C302_A-0.158-0.0950.165-1.116-7.921-1.238
147A_G285:C295_A-0.146-0.083-0.0350.595-4.199-0.908
148A_G286:C294_A-0.177-0.074-0.123-11.001-9.529-0.917
131A_G300:C266_A-0.154-0.086-0.115-0.448-5.174-0.698
120A_G305:C221_A-0.972-0.3910.377-1.934-7.858-2.012
151A_G325:A349_A-0.4181.412-0.618-5.8127.838-21.632
11A_GTP202:C323_A-0.142-0.081-0.028-0.4281.697-1.098
13A_U204:A321_A-0.1130.018-0.0220.31-4.708-2.941
18A_U209:G316_A1.9140.040.129-0.958-8.7573.385
112A_U213:G312_A3.061-0.7580.176-11.553-7.823-10.412
128A_U238:A242_A4.27-1.845-0.451-2.427-5.54-89.091
138A_U254:A257_A-0.1943.490.576-22.42417.785-79.125
142A_U278:A303_A0.108-0.1820.0523.062-13.9391.734
144A_U280:A299_A4.711-2.849-0.0920.79-1.15-85.209
145A_U283:A297_A0.1820.347-0.006-4.191-4.85-0.912
146A_U284:A296_A-0.1570.059-0.087-0.113-2.467-4.08
154A_U332:A344_A0.0540.061-0.243-5.465-22.44530.49
155A_U333:A342_A-0.1390.017-0.5141.966-6.224-3.236

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.