A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6VMY  PDB ID: 6VMY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15AA_A206A207:U318U319_AA-0.056-1.283.208-2.1957.6429.923-3.78-0.2922.814.4774.15830.938
16AA_A207A208:U317U318_AA0.463-1.6983.211-0.76214.78935.266-4.248-0.7942.3323.1881.19538.158
17AA_A208U209:G316U317_AA0.338-1.4283.2882.0774.7637.388-2.811-0.2593.1037.382-3.22137.734
19AA_A210G211:C314U315_AA0.235-1.4953.074-2.9919.0928.728-4.465-0.9772.4617.715.82730.248
116AA_A228A229:U223G224_AA-0.722-0.6482.9366.66411.96955.591-1.2491.0732.66112.621-7.02657.123
117AA_A229C230:G222U223_AA0.668-0.5173.0333.8338.92923.478-3.538-0.5072.72820.837-8.94525.383
120AA_A231G232:U219C220_AA6.137-1.9973.773-1.54626.74236.423-4.89-8.161.73437.2422.15344.941
113AA_A243G244:C310U311_AA0.291-2.113.131-1.2793.36519.725-7.466-1.372.7129.7183.69320.048
131AA_A249C250:G263U264_AA-1.168-0.7232.935-2.9481.29526.743-1.8541.823.0062.7866.34426.933
137AA_A276C277:G304A306_AA1.092-0.9353.409-4.616-1.61258.735-0.865-1.3553.345-1.6414.69758.92
14AA_C205A206:U319G320_AA-0.78-1.7433.7054.61912.76535.768-4.3291.7952.82419.921-7.20938.179
118AA_C230G305:C221G222_AA-1.687-0.9613.466-17.4147.48639.009-2.1470.3323.63710.49124.40643.208
122AA_C233C234:G217G218_AA-0.108-1.7013.1712.1736.42933.259-3.8660.5062.7911.089-3.74733.926
123AA_C234G235:C216G217_AA0.082-1.6663.2341.78914.81930.611-4.9380.1122.21726.204-3.16433.978
126AA_C237U238:A242G214_AA-2.392-2.4123.2316.2961.70468.685-2.192.3322.9761.507-5.56768.956
132AA_C250C251:G262G263_AA-0.087-1.8143.267-0.1548.34232.618-4.4040.1262.73414.5570.26933.64
133AA_C251G252:C261G262_AA-0.29-1.6233.148-0.15418.38330.2-4.9570.4591.88331.8460.26835.243
127AA_C274C275:G267G268_AA0.204-1.2683.2830.8227.35727.21-4.247-0.2362.85315.283-1.70728.181
128AA_C275G300:C266G267_AA1.584-2.8333.444-0.1977.0819.031-10.915-4.5742.23820.5160.57120.295
138AA_C277U278:A303G304_AA-0.991-1.5963.019-1.37712.15927.27-5.2031.6872.17124.2972.75229.842
145AA_C287C288:G291G293_AA-0.135-2.1813.072-1.1780.67874.459-1.8220.0773.0570.560.97474.469
130AA_C301A249:U264G265_AA-0.361-2.1793.7340.9540.04630.951-4.0910.8873.7180.086-1.78830.966
147AA_C326C328:U347G348_AA-3.143-0.9784.58532.16816.36349.461-1.8724.891.99417.188-33.7960.552
12AA_G203U204:A321U322_AA0.222-1.783.414-3.8221.78248.242-2.313-0.5763.3252.1754.66548.415
110AA_G211G212:C313C314_AA0.229-1.7153.293-0.6465.66533.133-3.859-0.4982.9639.8441.12233.607
111AA_G212U213:G312C313_AA-0.387-1.6253.362.082.65148.033-2.2020.643.2533.252-2.55248.144
121AA_G232C233:G218U219_AA-0.33-1.2733.189-3.4445.56846.123-2.0580.143.047.0654.3746.561
124AA_G235G236:C215C216_AA0.421-1.8023.273-0.731.94227.886-4.182-1.043.1314.0231.51227.961
125AA_G236C237:G214C215_AA-0.542-1.5993.284-0.8195.70537.273-3.1910.7373.0268.861.27137.7
114AA_G244G245:C309C310_AA0.4-1.9453.2623.2176.32834.378-4.129-0.2052.89410.566-5.37135.082
115AA_G245G246:A308C309_AA-1.456-1.1662.9947.1490.96932.96-2.1473.5142.5961.683-12.41533.719
134AA_G252G253:C260C261_AA-0.187-1.0342.719-1.2952.17637.531-1.8360.1512.6623.3782.0137.613
135AA_G253U254:A257C260_AA-3.0160.11-0.94732.893162.691141.1910.2221.475-1.05581.732-16.525175.353
140AA_G279U280:A299C302_AA-0.951-2.0843.2345.8471.86893.459-1.4630.7573.1521.282-4.01293.614
143AA_G285G286:C294C295_AA0.039-2.3363.4221.55710.09437.68-4.6680.1222.7315.288-2.35938.992
144AA_G286C287:G293C294_AA-0.765-1.2163.150.548-0.53330.474-2.211.563.156-1.014-1.04330.484
129AA_G300C301:G265C266_AA-0.375-2.3153.3630.13-5.11735.342-2.9790.6323.65-8.373-0.21335.699
119AA_G305A231:C220C221_AA-1.512-1.3953.121.9568.0383.381-20.32612.471-0.40365.887-16.0318.936
146AA_G325C326:G348A349_AA1.088-1.1573.722-2.4874.56235.528-2.598-2.1593.477.4264.04935.894
11AA_GTP202G203:U322C323_AA-0.777-1.9053.62-9.2532.37130.827-3.903-0.4483.5464.33116.90432.238
13AA_U204C205:G320A321_AA0.168-1.7913.265-0.9995.88933.214-3.995-0.4442.90810.1991.73133.732
18AA_U209A210:U315G316_AA-1.082-1.543.0943.67713.31227.439-5.0732.6431.99326.073-7.20330.659
112AA_U213A243:U311G312_AA-3.118-1.0823.314.514.55958.736-1.2723.7272.4574.565-14.52960.503
136AA_U254A255:A282A257_AA-2.7562.135-3.225-10.02211.062-115.73-1.137-1.514-3.493-6.517-5.904-116.338
139AA_U278G279:C302A303_AA-0.023-1.9393.354-1.4663.56625.976-5.215-0.3383.0617.8783.23926.256
141AA_U283U284:A296A297_AA-0.383-1.9713.0850.2216.56932.732-4.3970.72.64811.511-0.38833.368
142AA_U284G285:C295A296_AA0.409-1.8933.351-0.54710.1328.857-5.46-0.8782.54819.5791.05730.553
148AA_U332U333:A342A344_AA0.039-1.4025.044-28.90123.11242.928-3.461-2.5063.35626.50833.14956.1
149AA_U333C334:G341A342_AA-0.546-1.8433.1118.528.02585.997-1.5070.5722.9125.86-6.22186.635

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.