A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6W8D  PDB ID: 6W8D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA424:DT445_F-0.074-0.2120.15917.572-19.161-5.402
110E_DA433:DT436_F1.0330.261-0.285-1.145-32.1619.313
111E_DA434:DT435_F0.4360.095-0.379-19.135-31.408-3.342
114E_DA437:DT432_F1.198-0.2180.027-11.64-22.3291.692
116E_DA439:DT430_F-0.065-0.2590.101-21.688-11.551-7.052
117E_DA440:DT429_F-0.022-0.10.8120.556-17.759-4.248
120E_DA444:DT425_F0.5130.160.375-6.107-19.539-1.698
11E_DC423:DG446_F-0.5720.125-1.11327.8-36.553-2.478
18E_DC431:DG438_F0.177-0.619-0.787-0.91-12.4878.783
118E_DC441:DG428_F-0.9150.328-0.3662.5896.438-0.921
119E_DC443:DG426_F-0.7280.2210.568-8.1026.19610.287
14E_DG426:DC443_F0.194-0.0250.98618.1978.743-2.526
15E_DG428:DC441_F0.736-0.0380.071-7.0345.851-6.329
115E_DG438:DC431_F-0.206-0.4050.502-38.364-33.545-18.718
122E_DG446:DC423_F-0.402-0.56-0.1370.107-7.5380.095
13E_DT425:DA444_F-0.9190.0410.0120.397-37.135-1.182
16E_DT429:DA440_F-0.015-0.0950.4469.406-18.726-3.818
17E_DT430:DA439_F0.6040.139-0.2949.043-21.0474.114
19E_DT432:DA437_F-0.087-0.137-0.13715.488-21.21720.879
112E_DT435:DA434_F-1.558-0.07-0.2112.161-3.2571.546
113E_DT436:DA433_F-0.964-0.224-0.1430.314-7.209-2.876
121E_DT445:DA424_F-0.1570.0280.141-2.71-13.638-0.984

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.