6W8D: Base Pair Morphology Parameters

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NDB ID: 6W8D PDB ID: 6W8D

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	E_DA424:DT445_F	-0.074	-0.212	0.159	17.572	-19.161	-5.402
1	10	E_DA433:DT436_F	1.033	0.261	-0.285	-1.145	-32.16	19.313
1	11	E_DA434:DT435_F	0.436	0.095	-0.379	-19.135	-31.408	-3.342
1	14	E_DA437:DT432_F	1.198	-0.218	0.027	-11.64	-22.329	1.692
1	16	E_DA439:DT430_F	-0.065	-0.259	0.101	-21.688	-11.551	-7.052
1	17	E_DA440:DT429_F	-0.022	-0.1	0.812	0.556	-17.759	-4.248
1	20	E_DA444:DT425_F	0.513	0.16	0.375	-6.107	-19.539	-1.698
1	1	E_DC423:DG446_F	-0.572	0.125	-1.113	27.8	-36.553	-2.478
1	8	E_DC431:DG438_F	0.177	-0.619	-0.787	-0.91	-12.487	8.783
1	18	E_DC441:DG428_F	-0.915	0.328	-0.366	2.589	6.438	-0.921
1	19	E_DC443:DG426_F	-0.728	0.221	0.568	-8.102	6.196	10.287
1	4	E_DG426:DC443_F	0.194	-0.025	0.986	18.197	8.743	-2.526
1	5	E_DG428:DC441_F	0.736	-0.038	0.071	-7.034	5.851	-6.329
1	15	E_DG438:DC431_F	-0.206	-0.405	0.502	-38.364	-33.545	-18.718
1	22	E_DG446:DC423_F	-0.402	-0.56	-0.137	0.107	-7.538	0.095
1	3	E_DT425:DA444_F	-0.919	0.041	0.01	20.397	-37.135	-1.182
1	6	E_DT429:DA440_F	-0.015	-0.095	0.446	9.406	-18.726	-3.818
1	7	E_DT430:DA439_F	0.604	0.139	-0.294	9.043	-21.047	4.114
1	9	E_DT432:DA437_F	-0.087	-0.137	-0.137	15.488	-21.217	20.879
1	12	E_DT435:DA434_F	-1.558	-0.07	-0.211	2.161	-3.257	1.546
1	13	E_DT436:DA433_F	-0.964	-0.224	-0.143	0.314	-7.209	-2.876
1	21	E_DT445:DA424_F	-0.157	0.028	0.141	-2.71	-13.638	-0.984

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.